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Report for CCDS2352.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2352.1 Public Homo sapiens 2 SUMO1 24 110 108 CCDS HistoryNCBI Gene:7341Re-query CCDS DB by CCDS ID:2352.1Re-query CCDS DB by GeneID:7341See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2352.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392245.5 ENSP00000376076.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392245.5Link to Ensembl Protein Viewer:ENSP00000376076.1Re-query CCDS DB by Nucleotide ID:ENST00000392245Re-query CCDS DB by Protein ID:ENSP00000376076
Original member Current member EBI ENST00000392246.7 ENSP00000376077.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392246.7Link to Ensembl Protein Viewer:ENSP00000376077.2Re-query CCDS DB by Nucleotide ID:ENST00000392246Re-query CCDS DB by Protein ID:ENSP00000376077
Original member Current member NCBI NM_001005781.2 NP_001005781.1 Accepted alive Link to Nucleotide Sequence:NM_001005781.2Link to Protein Sequence:NP_001005781.1Re-query CCDS DB by Nucleotide ID:NM_001005781Re-query CCDS DB by Protein ID:NP_001005781Link to BLAST:NP_001005781.1
Original member Current member NCBI NM_003352.8 NP_003343.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003352.8Link to Protein Sequence:NP_003343.1Re-query CCDS DB by Nucleotide ID:NM_003352Re-query CCDS DB by Protein ID:NP_003343Link to BLAST:NP_003343.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005781.1 101 P63165-1 101 100% 0 0
NP_003343.1 101 P63165-1 101 100% 0 0

Chromosomal Locations for CCDS 2352.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 202207253 202207321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 202210735 202210806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 202214357 202214434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 202220032 202220106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 202238440 202238451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (306 nt):
ATGTCTGACCAGGAGGCAAAACCTTCAACTGAGGACTTGGGGGATAAGAAGGAAGGTGAATATATTAAAC
TCAAAGTCATTGGACAGGATAGCAGTGAGATTCACTTCAAAGTGAAAATGACAACACATCTCAAGAAACT
CAAAGAATCATACTGTCAAAGACAGGGTGTTCCAATGAATTCACTCAGGTTTCTCTTTGAGGGTCAGAGA
ATTGCTGATAATCATACTCCAAAAGAACTGGGAATGGAGGAAGAAGATGTGATTGAAGTTTATCAGGAAC
AAACGGGGGGTCATTCAACAGTTTAG

Translation (101 aa):
MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQR
IADNHTPKELGMEEEDVIEVYQEQTGGHSTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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