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Report for CCDS1550.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1550.1 Public Homo sapiens 1 H3-3A 24 110 108 CCDS HistoryNCBI Gene:3020Re-query CCDS DB by CCDS ID:1550.1Re-query CCDS DB by GeneID:3020See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1550.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366813.1 ENSP00000355778.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000366813.1Link to Ensembl Protein Viewer:ENSP00000355778.1Re-query CCDS DB by Nucleotide ID:ENST00000366813Re-query CCDS DB by Protein ID:ENSP00000355778
Original member Current member EBI ENST00000366815.10 ENSP00000355780.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000366815.10Link to Ensembl Protein Viewer:ENSP00000355780.3Re-query CCDS DB by Nucleotide ID:ENST00000366815Re-query CCDS DB by Protein ID:ENSP00000355780
Original member Current member EBI ENST00000366816.5 ENSP00000355781.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000366816.5Link to Ensembl Protein Viewer:ENSP00000355781.1Re-query CCDS DB by Nucleotide ID:ENST00000366816Re-query CCDS DB by Protein ID:ENSP00000355781
Original member Current member EBI ENST00000666609.1 ENSP00000499275.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000666609.1Link to Ensembl Protein Viewer:ENSP00000499275.1Re-query CCDS DB by Nucleotide ID:ENST00000666609Re-query CCDS DB by Protein ID:ENSP00000499275
Original member Current member EBI ENST00000661429.1 ENSP00000499385.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000661429.1Link to Ensembl Protein Viewer:ENSP00000499385.1Re-query CCDS DB by Nucleotide ID:ENST00000661429Re-query CCDS DB by Protein ID:ENSP00000499385
Original member Current member EBI ENST00000655399.1 ENSP00000499800.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000655399.1Link to Ensembl Protein Viewer:ENSP00000499800.1Re-query CCDS DB by Nucleotide ID:ENST00000655399Re-query CCDS DB by Protein ID:ENSP00000499800
Original member Current member NCBI NM_001379043.1 NP_001365972.1 Accepted alive Link to Nucleotide Sequence:NM_001379043.1Link to Protein Sequence:NP_001365972.1Re-query CCDS DB by Nucleotide ID:NM_001379043Re-query CCDS DB by Protein ID:NP_001365972Link to BLAST:NP_001365972.1
Original member Current member NCBI NM_001379045.1 NP_001365974.1 Accepted alive Link to Nucleotide Sequence:NM_001379045.1Link to Protein Sequence:NP_001365974.1Re-query CCDS DB by Nucleotide ID:NM_001379045Re-query CCDS DB by Protein ID:NP_001365974Link to BLAST:NP_001365974.1
Original member Current member NCBI NM_001379046.1 NP_001365975.1 Accepted alive Link to Nucleotide Sequence:NM_001379046.1Link to Protein Sequence:NP_001365975.1Re-query CCDS DB by Nucleotide ID:NM_001379046Re-query CCDS DB by Protein ID:NP_001365975Link to BLAST:NP_001365975.1
Original member Current member NCBI NM_001379047.1 NP_001365976.1 Accepted alive Link to Nucleotide Sequence:NM_001379047.1Link to Protein Sequence:NP_001365976.1Re-query CCDS DB by Nucleotide ID:NM_001379047Re-query CCDS DB by Protein ID:NP_001365976Link to BLAST:NP_001365976.1
Original member Current member NCBI NM_002107.7 NP_002098.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002107.7Link to Protein Sequence:NP_002098.1Re-query CCDS DB by Nucleotide ID:NM_002107Re-query CCDS DB by Protein ID:NP_002098Link to BLAST:NP_002098.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001365972.1 136 P84243 136 100% 0 0
NP_001365974.1 136 P84243 136 100% 0 0
NP_001365975.1 136 P84243 136 100% 0 0
NP_001365976.1 136 P84243 136 100% 0 0
NP_002098.1 136 P84243 136 100% 0 0

Chromosomal Locations for CCDS 1550.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 226064352 226064479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226065656 226065809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 226071351 226071479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (411 nt):
ATGGCTCGTACAAAGCAGACTGCCCGCAAATCGACCGGTGGTAAAGCACCCAGGAAGCAACTGGCTACAA
AAGCCGCTCGCAAGAGTGCGCCCTCTACTGGAGGGGTGAAGAAACCTCATCGTTACAGGCCTGGTACTGT
GGCGCTCCGTGAAATTAGACGTTATCAGAAGTCCACTGAACTTCTGATTCGCAAACTTCCCTTCCAGCGT
CTGGTGCGAGAAATTGCTCAGGACTTTAAAACAGATCTGCGCTTCCAGAGCGCAGCTATCGGTGCTTTGC
AGGAGGCAAGTGAGGCCTATCTGGTTGGCCTTTTTGAAGACACCAACCTGTGTGCTATCCATGCCAAACG
TGTAACAATTATGCCAAAAGACATCCAGCTAGCACGCCGCATACGTGGAGAACGTGCTTAA

Translation (136 aa):
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQR
LVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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