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Report for CCDS55414.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55414.2 Public Homo sapiens X CCDC120 24 110 108 CCDS HistoryNCBI Gene:90060Re-query CCDS DB by CCDS ID:55414.2Re-query CCDS DB by GeneID:90060See the combined annotation on chromosome X in Sequence Viewer

Public Note for CCDS 55414.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 55414.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000603986.6 ENSP00000474071.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000603986.6Link to Ensembl Protein Viewer:ENSP00000474071.1Re-query CCDS DB by Nucleotide ID:ENST00000603986Re-query CCDS DB by Protein ID:ENSP00000474071
Original member Current member NCBI NM_001163321.4 NP_001156793.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001163321.4Link to Protein Sequence:NP_001156793.2Re-query CCDS DB by Nucleotide ID:NM_001163321Re-query CCDS DB by Protein ID:NP_001156793Link to BLAST:NP_001156793.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156793.2 696 Q96HB5-4 696 100% 0 0

Chromosomal Locations for CCDS 55414.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 49062042 49062104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49062235 49062325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49062468 49062601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49063861 49064001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49064370 49064664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49065036 49065098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49065454 49065628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49065747 49065845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49067176 49068090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49068544 49068658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2091 nt):
ATGCGAAGGGAACCAAGGTACCAGGGCCAAGTGGGTCCAGACATCCACACGGATTCTGAAAGGACTTTGT
CCAGCCATCAGCCACGGCCTCTCGACAGCACCAAGATGGAAGTCAAAGGTCAGCTGATCAGCTCTCCTAC
CTTCAATGCCCCAGCTGCCCTGTTCGGAGAGGCTGCCCCCCAGGTGAAGTCAGAGCGTCTGCGGGGGCTG
CTTGACCGGCAGCGGACCCTGCAGGAGGCCCTGAGCCTGAAACTTCAGGAGCTCCGCAAAGTGTGTCTCC
AGGAGGCGGAGCTGACTGGCCAGCTGCCCCCTGAGTGCCCACTAGAGCCTGGTGAACGGCCCCAGTTGGT
CCGCCGGCGGCCCCCCACAGCCCGCGCCTACCCTCCACCGCACCCCAACCAAGCACACCACTCCTTGTGC
CCTGCTGAGGAGCTGGCTCTTGAGGCCCTGGAACGCGAGGTGTCAGTGCAACAGCAGATCGCGGCGGCCG
CCCGCCGCCTGGCCTTGGCCCCTGATCTGAGCACCGAGCAGCGCCGGCGCCGGCGCCAGGTCCAGGCAGA
TGCACTGAGGAGGCTGCATGAGCTAGAGGAGCAGCTCAGGGATGTCCGGGCCCGCCTTGGCCTCCCAGTG
CTCCCGCTGCCCCAGCCACTGCCACTGTCCACGGGGTCAGTGATCACCACCCAGGGAGTCTGCCTGGGCA
TGCGTCTTGCTCAGCTCAGCCAAGAGGACGTAGTTCTGCACTCAGAGAGCAGCTCCCTCTCAGAGTCTGG
GGCCAGCCATGACAACGAGGAGCCCCATGGCTGCTTCTCTCTGGCCGAGCGCCCCTCACCACCCAAGGCT
TGGGACCAGCTGCGGGCAGTATCTGGGGGGAGCCCTGAGCGGCGAACCCCATGGAAACCACCTCCATCAG
ATCTTTATGGGGATCTGAAGAGCCGGCGGAACTCTGTGGCCAGCCCCACCAGCCCCACACGCTCGCTGCC
CAGGAGTGCCTCCAGTTTTGAGGGGCGAAGTGTGCCTGCCACCCCTGTCCTCACCCGGGGCGCTGGCCCC
CAGCTCTGCAAACCTGAAGGCCTTCATTCTCGTCAGTGGTCCGGCAGCCAGGACTCCCAGATGGGCTTCC
CCCGGGCGGACCCTGCCTCCGATCGCGCCTCCCTCTTCGTAGCTCGCACCCGCCGCAGCAACAGTTCTGA
GGCCCTGCTGGTGGACCGGGCCGCTGGTGGGGGAGCTGGCTCCCCGCCTGCCCCTCTGGCTCCCTCTGCC
TCTGGCCCCCCAGTCTGCAAGAGCAGTGAGGTGCTGTATGAGCGCCCCCAACCAACCCCTGCCTTCTCCT
CCCGCACAGCAGGCCCCCCAGACCCTCCCCGGGCCGCCCGGCCTAGCTCAGCTGCCCCTGCCTCCCGAGG
TGCCCCCCGGCTCCCACCTGTGTGTGGAGACTTCCTCTTGGACTATTCCTTGGACCGGGGCCTGCCCCGC
AGTGGCGGTGGAACAGGCTGGGGGGAGCTGCCGCCTGCAGCTGAGGTCCCAGGACCCCTCTCCCGCCGGG
ATGGGCTCCTCACCATGCTCCCCGGCCCACCACCTGTGTATGCAGCTGACAGCAACAGCCCCCTCCTCCG
CACCAAGGACCCCCACACCCGTGCCACCCGCACTAAGCCCTGTGGCCTGCCCCCAGAGGCTGCCGAAGGC
CCTGAGGTGCATCCAAACCCTCTGCTGTGGATGCCCCCACCCACCCGTATCCCCTCGGCTGGTGAACGCA
GTGGCCACAAGAACCTGGCTCTGGAGGGGCTGCGGGACTGGTACATCCGGAACTCGGGACTGGCTGCGGG
GCCCCAGCGCCGGCCTGTGCTCCCTTCCGTGGGCCCGCCACACCCACCCTTCCTCCATGCCCGCTGCTAT
GAGGTGGGCCAGGCGCTGTACGGGGCCCCCAGCCAGGCGCCACTCCCACACTCGAGGAGTTTCACGGCGC
CCCCTGTCTCTGGCAGATACTACGCGGACTTCCTGTATCCCCCGGAGCTGAGCGCTCGTTTAAGTGACCT
GACGCTAGAGGGGGAGCAGTCCTCCAGTTCTGACACCCAGACCCCGGGGACACTGGTCTGA

Translation (696 aa):
MRREPRYQGQVGPDIHTDSERTLSSHQPRPLDSTKMEVKGQLISSPTFNAPAALFGEAAPQVKSERLRGL
LDRQRTLQEALSLKLQELRKVCLQEAELTGQLPPECPLEPGERPQLVRRRPPTARAYPPPHPNQAHHSLC
PAEELALEALEREVSVQQQIAAAARRLALAPDLSTEQRRRRRQVQADALRRLHELEEQLRDVRARLGLPV
LPLPQPLPLSTGSVITTQGVCLGMRLAQLSQEDVVLHSESSSLSESGASHDNEEPHGCFSLAERPSPPKA
WDQLRAVSGGSPERRTPWKPPPSDLYGDLKSRRNSVASPTSPTRSLPRSASSFEGRSVPATPVLTRGAGP
QLCKPEGLHSRQWSGSQDSQMGFPRADPASDRASLFVARTRRSNSSEALLVDRAAGGGAGSPPAPLAPSA
SGPPVCKSSEVLYERPQPTPAFSSRTAGPPDPPRAARPSSAAPASRGAPRLPPVCGDFLLDYSLDRGLPR
SGGGTGWGELPPAAEVPGPLSRRDGLLTMLPGPPPVYAADSNSPLLRTKDPHTRATRTKPCGLPPEAAEG
PEVHPNPLLWMPPPTRIPSAGERSGHKNLALEGLRDWYIRNSGLAAGPQRRPVLPSVGPPHPPFLHARCY
EVGQALYGAPSQAPLPHSRSFTAPPVSGRYYADFLYPPELSARLSDLTLEGEQSSSSDTQTPGTLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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