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Report for CCDS4180.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4180.1 Public Homo sapiens 5 TXNDC15 24 110 108 CCDS HistoryNCBI Gene:79770Re-query CCDS DB by CCDS ID:4180.1Re-query CCDS DB by GeneID:79770See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4180.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358387.9 ENSP00000351157.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000358387.9Link to Ensembl Protein Viewer:ENSP00000351157.5Re-query CCDS DB by Nucleotide ID:ENST00000358387Re-query CCDS DB by Protein ID:ENSP00000351157
Original member Current member NCBI NM_024715.4 NP_078991.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024715.4Link to Protein Sequence:NP_078991.3Re-query CCDS DB by Nucleotide ID:NM_024715Re-query CCDS DB by Protein ID:NP_078991Link to BLAST:NP_078991.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078991.3 360 Q96J42-1 360 100% 0 0

Chromosomal Locations for CCDS 4180.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 134874428 134874530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134887695 134888182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134893492 134893655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134896294 134896424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134899489 134899685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1083 nt):
ATGGTCCCGGCTGCCGGTCGACGACCGCCCCGCGTCATGCGGCTCCTCGGCTGGTGGCAAGTATTGCTGT
GGGTGCTGGGACTTCCCGTCCGCGGCGTGGAGGTTGCAGAGGAAAGTGGTCGCTTATGGTCAGAGGAGCA
GCCTGCTCACCCTCTCCAGGTGGGGGCTGTGTACCTGGGTGAGGAGGAGCTCCTGCATGACCCGATGGGC
CAGGACAGGGCAGCAGAAGAGGCCAATGCGGTGCTGGGGCTGGACACCCAAGGCGATCACATGGTGATGC
TGTCTGTGATTCCTGGGGAAGCTGAGGACAAAGTGAGTTCAGAGCCTAGCGGCGTCACCTGTGGTGCTGG
AGGAGCGGAGGACTCAAGGTGCAACGTCCGAGAGAGCCTTTTCTCTCTGGATGGCGCTGGAGCACACTTC
CCTGACAGAGAAGAGGAGTATTACACAGAGCCAGAAGTGGCGGAATCTGACGCAGCCCCGACAGAGGACT
CCAATAACACTGAAAGTCTGAAATCCCCAAAGGTGAACTGTGAGGAGAGAAACATTACAGGATTAGAAAA
TTTCACTCTGAAAATTTTAAATATGTCACAGGACCTTATGGATTTTCTGAACCCAAACGGTAGTGACTGT
ACTCTAGTCCTGTTTTACACCCCGTGGTGCCGCTTTTCTGCCAGTTTGGCCCCTCACTTTAACTCTCTGC
CCCGGGCATTTCCAGCTCTTCACTTTTTGGCACTGGATGCATCTCAGCACAGCAGCCTTTCTACCAGGTT
TGGCACCGTAGCTGTTCCTAATATTTTATTATTTCAAGGAGCTAAACCAATGGCCAGATTTAATCATACA
GATCGAACACTGGAAACACTGAAAATCTTCATTTTTAATCAGACAGGTATAGAAGCCAAGAAGAATGTGG
TGGTAACTCAAGCCGACCAAATAGGCCCTCTTCCCAGCACTTTGATAAAAAGTGTGGACTGGTTGCTTGT
ATTTTCCTTATTCTTTTTAATTAGTTTTATTATGTATGCTACCATTCGAACTGAGAGTATTCGGTGGCTA
ATTCCAGGACAAGAGCAGGAACATGTGGAGTAG

Translation (360 aa):
MVPAAGRRPPRVMRLLGWWQVLLWVLGLPVRGVEVAEESGRLWSEEQPAHPLQVGAVYLGEEELLHDPMG
QDRAAEEANAVLGLDTQGDHMVMLSVIPGEAEDKVSSEPSGVTCGAGGAEDSRCNVRESLFSLDGAGAHF
PDREEEYYTEPEVAESDAAPTEDSNNTESLKSPKVNCEERNITGLENFTLKILNMSQDLMDFLNPNGSDC
TLVLFYTPWCRFSASLAPHFNSLPRAFPALHFLALDASQHSSLSTRFGTVAVPNILLFQGAKPMARFNHT
DRTLETLKIFIFNQTGIEAKKNVVVTQADQIGPLPSTLIKSVDWLLVFSLFFLISFIMYATIRTESIRWL
IPGQEQEHVE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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