NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS30645.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30645.1 Public Homo sapiens 1 CATSPER4 24 110 108 CCDS HistoryNCBI Gene:378807Re-query CCDS DB by CCDS ID:30645.1Re-query CCDS DB by GeneID:378807See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30645.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000456354.7 ENSP00000390423.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000456354.7Link to Ensembl Protein Viewer:ENSP00000390423.3Re-query CCDS DB by Nucleotide ID:ENST00000456354Re-query CCDS DB by Protein ID:ENSP00000390423
Original member Current member NCBI NM_198137.2 NP_937770.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198137.2Link to Protein Sequence:NP_937770.1Re-query CCDS DB by Nucleotide ID:NM_198137Re-query CCDS DB by Protein ID:NP_937770Link to BLAST:NP_937770.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_937770.1 472 Q7RTX7-1 472 100% 0 0

Chromosomal Locations for CCDS 30645.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 26190628 26190840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26191287 26191430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26193787 26193888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26197686 26197783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26197957 26198077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26198286 26198419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26199884 26200058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26200830 26201041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26201354 26201519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26202489 26202542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1419 nt):
ATGAGGGATAATGAAAAGGCCTGGTGGCAGCAATGGACCTCCCATACAGGCCTCGAGGGGTGGGGCGGGA
CTCAGGAGGACCGTATGGGGTTTGGAGGGGCAGTAGCTGCACTGAGGGGCCGCCCCTCTCCCCTGCAGAG
TACCATTCACGAGTCCTACGGTCGGCCAGAGGAGCAAGTGCTCATCAACCGCCAGGAAATCACGAACAAA
GCGGACGCCTGGGACATGCAGGAGTTCATCACTCACATGTACATCAAGCAGCTGCTCCGACACCCCGCCT
TCCAACTGCTGCTGGCCCTGCTGCTGGTGATCAATGCCATCACCATCGCTCTCCGTACCAACTCCTACCT
GGACCAGAAACACTATGAGTTGTTCTCTACCATAGATGACATTGTGCTGACCATCCTTCTTTGTGAGGTT
CTCCTTGGCTGGCTCAATGGCTTCTGGATTTTCTGGAAGGACGGCTGGAACATCCTCAACTTCATTATCG
TCTTTATCTTGCTCTTGCGGTTCTTCATTAATGAAATCAATATTCCCTCCATCAACTACACTCTCAGGGC
GCTTCGTCTGGTGCATGTGTGCATGGCGGTGGAGCCCCTCGCCCGGATCATCCGCGTCATCCTGCAGTCG
GTGCCTGACATGGCCAATATCATGGTCCTCATCCTCTTCTTCATGCTGGTTTTTTCCGTGTTTGGAGTAA
CACTCTTTGGTGCATTCGTGCCCAAGCATTTCCAGAACATACAGGTTGCGCTGTACACCCTCTTCATCTG
CATCACCCAGGACGGCTGGGTGGACATCTACAGTGACTTCCAGACAGAGAAGAGGGAATATGCAATGGAG
ATTGGGGGTGCCATCTACTTTACCATCTTCATCACCATCGGTGCCTTCATTGGCATCAACCTGTTCGTCA
TCGTGGTGACCACCAACCTGGAGCAAATGATGAAGGCAGGAGAGCAGGGACAACAGCAACGAATAACCTT
TAGTGAGACAGGCGCAGAGGAAGAGGAGGAGAATGACCAGCTGCCACTGGTGCATTGTGTGGTCGCCCGC
TCGGAGAAATCTGGTCTCCTCCAGGAACCCCTTGCGGGAGGCCCCCTGTCGAACCTCTCAGAAAACACGT
GTGACAACTTTTGCTTGGTGCTTGAGGCAATACAGGAGAACCTGAGGCAGTACAAGGAGATCCGAGATGA
ACTCAACATGATTGTGGAGGAGGTGCGCGCAATCCGCTTCAACCAGGAGCAGGAGTCAGAGGTGTTGAAC
AGGCGCTCGTCGACGAGCGGGTCGTTGGAGACTACGTCATCCAAGGACATCCGCCAGATGTCTCAACAGC
AAGACTTGCTCAGTGCGCTCGTTAGCATGGAAAAGGTTCATGACTCTAGCTCACAAATACTCCTTAAAAA
ACACAAGAGCAGCCACTGA

Translation (472 aa):
MRDNEKAWWQQWTSHTGLEGWGGTQEDRMGFGGAVAALRGRPSPLQSTIHESYGRPEEQVLINRQEITNK
ADAWDMQEFITHMYIKQLLRHPAFQLLLALLLVINAITIALRTNSYLDQKHYELFSTIDDIVLTILLCEV
LLGWLNGFWIFWKDGWNILNFIIVFILLLRFFINEINIPSINYTLRALRLVHVCMAVEPLARIIRVILQS
VPDMANIMVLILFFMLVFSVFGVTLFGAFVPKHFQNIQVALYTLFICITQDGWVDIYSDFQTEKREYAME
IGGAIYFTIFITIGAFIGINLFVIVVTTNLEQMMKAGEQGQQQRITFSETGAEEEEENDQLPLVHCVVAR
SEKSGLLQEPLAGGPLSNLSENTCDNFCLVLEAIQENLRQYKEIRDELNMIVEEVRAIRFNQEQESEVLN
RRSSTSGSLETTSSKDIRQMSQQQDLLSALVSMEKVHDSSSQILLKKHKSSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH