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Report for CCDS30621.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30621.1 Public Homo sapiens 1 HP1BP3 24 110 108 CCDS HistoryNCBI Gene:50809Re-query CCDS DB by CCDS ID:30621.1Re-query CCDS DB by GeneID:50809See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30621.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000312239.10 ENSP00000312625.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000312239.10Link to Ensembl Protein Viewer:ENSP00000312625.5Re-query CCDS DB by Nucleotide ID:ENST00000312239Re-query CCDS DB by Protein ID:ENSP00000312625
Original member Current member EBI ENST00000438032.6 ENSP00000403039.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000438032.6Link to Ensembl Protein Viewer:ENSP00000403039.2Re-query CCDS DB by Nucleotide ID:ENST00000438032Re-query CCDS DB by Protein ID:ENSP00000403039
Original member Current member NCBI NM_001372052.1 NP_001358981.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001372052.1Link to Protein Sequence:NP_001358981.1Re-query CCDS DB by Nucleotide ID:NM_001372052Re-query CCDS DB by Protein ID:NP_001358981Link to BLAST:NP_001358981.1
Original member Current member NCBI NM_001376787.1 NP_001363716.1 Accepted alive Link to Nucleotide Sequence:NM_001376787.1Link to Protein Sequence:NP_001363716.1Re-query CCDS DB by Nucleotide ID:NM_001376787Re-query CCDS DB by Protein ID:NP_001363716Link to BLAST:NP_001363716.1
Original member Current member NCBI NM_001376788.1 NP_001363717.1 Accepted alive Link to Nucleotide Sequence:NM_001376788.1Link to Protein Sequence:NP_001363717.1Re-query CCDS DB by Nucleotide ID:NM_001376788Re-query CCDS DB by Protein ID:NP_001363717Link to BLAST:NP_001363717.1
Original member Current member NCBI NM_001376789.1 NP_001363718.1 Accepted alive Link to Nucleotide Sequence:NM_001376789.1Link to Protein Sequence:NP_001363718.1Re-query CCDS DB by Nucleotide ID:NM_001376789Re-query CCDS DB by Protein ID:NP_001363718Link to BLAST:NP_001363718.1
Original member Current member NCBI NM_001376790.1 NP_001363719.1 Accepted alive Link to Nucleotide Sequence:NM_001376790.1Link to Protein Sequence:NP_001363719.1Re-query CCDS DB by Nucleotide ID:NM_001376790Re-query CCDS DB by Protein ID:NP_001363719Link to BLAST:NP_001363719.1
Original member Current member NCBI NM_016287.5 NP_057371.2 Accepted alive Link to Nucleotide Sequence:NM_016287.5Link to Protein Sequence:NP_057371.2Re-query CCDS DB by Nucleotide ID:NM_016287Re-query CCDS DB by Protein ID:NP_057371Link to BLAST:NP_057371.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001358981.1 553 Q5SSJ5-1 553 100% 0 0
NP_001363716.1 553 Q5SSJ5-1 553 100% 0 0
NP_001363717.1 553 Q5SSJ5-1 553 100% 0 0
NP_001363718.1 553 Q5SSJ5-1 553 100% 0 0
NP_001363719.1 553 Q5SSJ5-1 553 100% 0 0
NP_057371.2 553 Q5SSJ5-1 553 100% 0 0

Chromosomal Locations for CCDS 30621.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 20744797 20745091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 20745543 20745656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 20747544 20747655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 20749723 20749882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 20757166 20757256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 20765377 20765531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 20767584 20767664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 20770930 20771073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 20773451 20773610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 20776597 20776750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 20779812 20779911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 20780345 20780440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1662 nt):
ATGGCGACTGATACGTCTCAAGGTGAACTCGTCCATCCTAAGGCACTCCCACTTATAGTAGGAGCTCAGC
TGATCCACGCGGACAAGTTAGGTGAGAAGGTAGAAGATAGCACCATGCCGATTCGTCGAACTGTGAATTC
TACCCGGGAAACTCCTCCCAAAAGCAAGCTTGCTGAAGGGGAGGAAGAAAAGCCAGAACCAGACATAAGT
TCAGAGGAATCTGTCTCCACTGTAGAAGAACAAGAGAATGAAACTCCACCTGCTACTTCGAGTGAGGCAG
AGCAGCCAAAGGGGGAACCTGAGAATGAAGAGAAGGAAGAAAATAAGTCTTCTGAGGAAACCAAAAAGGA
TGAGAAAGATCAGTCTAAAGAAAAGGAGAAGAAAGTGAAAAAAACAATTCCTTCCTGGGCTACCCTTTCT
GCCAGCCAGCTAGCCAGGGCCCAGAAACAAACACCGATGGCTTCTTCCCCACGTCCCAAGATGGATGCAA
TCTTAACTGAGGCCATTAAGGCATGCTTCCAGAAGAGTGGTGCATCAGTGGTTGCTATTCGAAAATACAT
CATCCATAAGTATCCTTCTCTGGAGCTGGAGAGAAGGGGTTATCTCCTTAAACAAGCACTGAAAAGAGAA
TTAAATAGAGGAGTCATCAAACAGGTTAAAGGAAAAGGTGCTTCTGGAAGTTTTGTTGTGGTTCAGAAAT
CAAGAAAAACACCTCAGAAATCCAGAAACAGAAAGAATAGGAGCTCTGCAGTGGATCCAGAACCACAAGT
AAAATTGGAGGATGTCCTCCCACTGGCCTTTACTCGCCTTTGTGAACCTAAAGAAGCTTCCTACAGTCTC
ATCAGGAAATATGTGTCTCAGTATTATCCTAAGCTTAGAGTGGACATCAGGCCTCAGCTGTTGAAGAACG
CTCTGCAGAGAGCAGTAGAGAGGGGCCAGTTAGAACAGATAACTGGCAAAGGTGCTTCGGGGACATTCCA
GCTGAAGAAATCAGGGGAGAAACCCCTGCTTGGTGGAAGCCTGATGGAATATGCAATCTTGTCTGCCATT
GCTGCCATGAATGAGCCGAAGACCTGCTCTACCACTGCTCTGAAGAAGTATGTCCTAGAGAATCACCCAG
GAACCAATTCTAACTATCAAATGCATTTGCTGAAAAAAACCCTGCAGAAATGCGAAAAGAATGGGTGGAT
GGAACAGATCTCTGGGAAAGGGTTCAGTGGCACCTTCCAGCTCTGTTTTCCCTATTATCCCAGCCCAGGA
GTTCTGTTTCCGAAGAAAGAGCCAGATGATTCTAGAGATGAGGATGAAGATGAAGATGAGTCATCAGAAG
AAGACTCTGAGGATGAAGAGCCGCCACCTAAGAGAAGGTTGCAGAAGAAAACCCCAGCCAAGTCCCCAGG
GAAGGCCGCATCTGTGAAGCAGAGAGGGTCCAAACCTGCACCTAAAGTCTCAGCTGCCCAGCGGGGGAAA
GCTAGGCCCTTGCCTAAGAAAGCACCTCCTAAGGCCAAAACGCCTGCCAAGAAGACCAGACCCTCATCCA
CAGTCATCAAGAAACCTAGTGGTGGCTCCTCAAAGAAGCCTGCAACCAGTGCAAGAAAGGAAGTAAAATT
GCCGGGCAAGGGCAAATCCACCATGAAGAAGTCTTTCAGAGTGAAAAAGTAA

Translation (553 aa):
MATDTSQGELVHPKALPLIVGAQLIHADKLGEKVEDSTMPIRRTVNSTRETPPKSKLAEGEEEKPEPDIS
SEESVSTVEEQENETPPATSSEAEQPKGEPENEEKEENKSSEETKKDEKDQSKEKEKKVKKTIPSWATLS
ASQLARAQKQTPMASSPRPKMDAILTEAIKACFQKSGASVVAIRKYIIHKYPSLELERRGYLLKQALKRE
LNRGVIKQVKGKGASGSFVVVQKSRKTPQKSRNRKNRSSAVDPEPQVKLEDVLPLAFTRLCEPKEASYSL
IRKYVSQYYPKLRVDIRPQLLKNALQRAVERGQLEQITGKGASGTFQLKKSGEKPLLGGSLMEYAILSAI
AAMNEPKTCSTTALKKYVLENHPGTNSNYQMHLLKKTLQKCEKNGWMEQISGKGFSGTFQLCFPYYPSPG
VLFPKKEPDDSRDEDEDEDESSEEDSEDEEPPPKRRLQKKTPAKSPGKAASVKQRGSKPAPKVSAAQRGK
ARPLPKKAPPKAKTPAKKTRPSSTVIKKPSGGSSKKPATSARKEVKLPGKGKSTMKKSFRVKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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