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Report for CCDS86884.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86884.1 Public Homo sapiens 2 GTDC1 24 110 108 CCDS HistoryNCBI Gene:79712Re-query CCDS DB by CCDS ID:86884.1Re-query CCDS DB by GeneID:79712See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 86884.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409298.5 ENSP00000386691.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409298.5Link to Ensembl Protein Viewer:ENSP00000386691.1Re-query CCDS DB by Nucleotide ID:ENST00000409298Re-query CCDS DB by Protein ID:ENSP00000386691
Original member Current member NCBI NM_001354352.2 NP_001341281.1 Accepted alive Link to Nucleotide Sequence:NM_001354352.2Link to Protein Sequence:NP_001341281.1Re-query CCDS DB by Nucleotide ID:NM_001354352Re-query CCDS DB by Protein ID:NP_001341281Link to BLAST:NP_001341281.1
Original member Current member NCBI NM_001354362.3 NP_001341291.1 Accepted alive Link to Nucleotide Sequence:NM_001354362.3Link to Protein Sequence:NP_001341291.1Re-query CCDS DB by Nucleotide ID:NM_001354362Re-query CCDS DB by Protein ID:NP_001341291Link to BLAST:NP_001341291.1
Original member Current member NCBI NM_001376325.2 NP_001363254.1 Accepted alive Link to Nucleotide Sequence:NM_001376325.2Link to Protein Sequence:NP_001363254.1Re-query CCDS DB by Nucleotide ID:NM_001376325Re-query CCDS DB by Protein ID:NP_001363254Link to BLAST:NP_001363254.1
Original member Current member NCBI NM_001376326.2 NP_001363255.1 Accepted alive Link to Nucleotide Sequence:NM_001376326.2Link to Protein Sequence:NP_001363255.1Re-query CCDS DB by Nucleotide ID:NM_001376326Re-query CCDS DB by Protein ID:NP_001363255Link to BLAST:NP_001363255.1
Original member Current member NCBI NM_001376327.2 NP_001363256.1 Accepted alive Link to Nucleotide Sequence:NM_001376327.2Link to Protein Sequence:NP_001363256.1Re-query CCDS DB by Nucleotide ID:NM_001376327Re-query CCDS DB by Protein ID:NP_001363256Link to BLAST:NP_001363256.1
Original member Current member NCBI NM_001376328.1 NP_001363257.1 Accepted alive Link to Nucleotide Sequence:NM_001376328.1Link to Protein Sequence:NP_001363257.1Re-query CCDS DB by Nucleotide ID:NM_001376328Re-query CCDS DB by Protein ID:NP_001363257Link to BLAST:NP_001363257.1

Chromosomal Locations for CCDS 86884.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 143947052 143947135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143951982 143952073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143952773 143952843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143957195 143957339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143970653 143970762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144141882 144142055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144145572 144145739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144208603 144208781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1023 nt):
ATGAGTATCCTCATCATTGAAGCATTCTATGGAGGCTCCCATAAACAGCTGGTGGATCTTCTTCAAGAAG
AGTTAGGAGACTGTGTCGTTTATACCCTTCCTGCAAAGAAATGGCATTGGAGAGCCCGGACATCTGCTTT
ATATTTCTCTCAGACCATTCCCATCAGTGAGCATTACAGGACCCTCTTTGCAAGTTCAGTGCTTAACCTG
ACCGAACTGGCTGCCCTTCGGCCTGACCTTGGGAAACTGAAAAAGATTCTGTATTTTCACGAGAACCAGT
TGATATATCCTGTCAAGAAATGTCAGGAGAGGGATTTCCAATATGGATACAACCAAATTCTTTCATGCCT
GGTGGCTGATGTGGTTGTATTCAACTCAGTTTTTAATATGGAATCATTTCTCACTTCCATGGGAAAATTT
ATGAAGCTGATTCCTGATCACAGACCCAAGGATCTGGAAAGCATCATCAGACCCAAGTGCCAAGTTATTT
ACTTTCCCATCAGGTTTCCTGATGTGAGCAGGGAGCATGATAAAGATCCAGAAAGCTTTTTTAAGGTATT
AATGCATCTTAAAGACTTAGGACTCAATTTCCACGTGTCTGTACTTGGAGAAACCTTCACAGATGTCCCA
GATATTTTTTCAGAGGCCAAAAAGGCATTGGGATCTTCTGTCTTACACTGGGGCTACTTACCCAGCAAAG
ATGACTATTTCCAAGTACTGTGCATGGCTGATGTTGTCATCTCAACAGCTAAGCATGAATTCTTTGGAGT
GGCAATGTTGGAAGCTGTGTACTGTGGGTGTTACCCACTTTGTCCTAAAGATTTGGTTTATCCCGAAATA
TTTCCAGCTGAATATCTGTATTCTACACCTGAACAGCTTTCAAAAAGGCTCCAGAATTTCTGCAAGAGAC
CAGATATTATAAGAAAACATCTCTATAAGGGTGAAATCGCTCCGTTTTCTTGGGCAGCCCTACATGGTAA
ATTCAGGTCTCTGCTTACAACAGAACCTAGGGAAGATTTGTGA

Translation (340 aa):
MSILIIEAFYGGSHKQLVDLLQEELGDCVVYTLPAKKWHWRARTSALYFSQTIPISEHYRTLFASSVLNL
TELAALRPDLGKLKKILYFHENQLIYPVKKCQERDFQYGYNQILSCLVADVVVFNSVFNMESFLTSMGKF
MKLIPDHRPKDLESIIRPKCQVIYFPIRFPDVSREHDKDPESFFKVLMHLKDLGLNFHVSVLGETFTDVP
DIFSEAKKALGSSVLHWGYLPSKDDYFQVLCMADVVISTAKHEFFGVAMLEAVYCGCYPLCPKDLVYPEI
FPAEYLYSTPEQLSKRLQNFCKRPDIIRKHLYKGEIAPFSWAALHGKFRSLLTTEPREDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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