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Report for CCDS33960.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33960.1 Public Homo sapiens 4 ZNF518B 24 110 108 CCDS HistoryNCBI Gene:85460Re-query CCDS DB by CCDS ID:33960.1Re-query CCDS DB by GeneID:85460See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33960.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000326756.4 ENSP00000317614.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000326756.4Link to Ensembl Protein Viewer:ENSP00000317614.3Re-query CCDS DB by Nucleotide ID:ENST00000326756Re-query CCDS DB by Protein ID:ENSP00000317614
Original member Current member NCBI NM_001375816.1 NP_001362745.1 Accepted alive Link to Nucleotide Sequence:NM_001375816.1Link to Protein Sequence:NP_001362745.1Re-query CCDS DB by Nucleotide ID:NM_001375816Re-query CCDS DB by Protein ID:NP_001362745Link to BLAST:NP_001362745.1
Original member Current member NCBI NM_001375817.1 NP_001362746.1 Accepted alive Link to Nucleotide Sequence:NM_001375817.1Link to Protein Sequence:NP_001362746.1Re-query CCDS DB by Nucleotide ID:NM_001375817Re-query CCDS DB by Protein ID:NP_001362746Link to BLAST:NP_001362746.1
Original member Current member NCBI NM_053042.3 NP_444270.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_053042.3Link to Protein Sequence:NP_444270.2Re-query CCDS DB by Nucleotide ID:NM_053042Re-query CCDS DB by Protein ID:NP_444270Link to BLAST:NP_444270.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001362745.1 1074 Q9C0D4 1074 100% 0 0
NP_001362746.1 1074 Q9C0D4 1074 100% 0 0
NP_444270.2 1074 Q9C0D4 1074 100% 0 0

Chromosomal Locations for CCDS 33960.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 10443104 10446328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3225 nt):
ATGAAGGATATTGGACAGCAGCTATACACTACACACTTGAACGGCGGACATAATTCCTTGACCATGTCAC
CCAAACAGCCTGATGCTAATGGAGCACCTCGGCCAAATAGACAAGAAGCACAAACCCTTTTGTATCAAGG
CTCAGAGGCAGAGGCTGCCATGATGACCATTGCTACATGTGCAAAGTGCAAAAGTGTTCACAAGATCTCT
CTTCAAGATTTGCAGAAGGGTACAGGGAAGGACGGTATGTATGTCTGCTTCCAGTGCAGCCTCGGTGCAG
CTCCTCCCAATTTTCATTTTGTGAGCAATAATTCCAGTGCGACTCATGTTGGAAATAAAACTGAAAACTT
CTCAAGTTCTGTCAATAGCAAATTTAAGGTAAGGAACTTTAAGCCAGGCAAATACTATTGTGATAAATGT
CGATTCTCTACAAAGGACCCGCTGCAGTACAAAAAGCACACCCTTCAACACGAGGAGATTAAATTCATTT
GTTCTCACTGCAGCTACATTTCGTATACGAAAGGAGAGTTTCAGAGGCATTTGGTGAAACACACAGGCAT
ATTTCCTTATCAGTGTGAGTATTGTGACTATGGTGCTATTAGAAATGATTATATTGTCAAACACACGAAG
AGAGTACATGAAAGGGCAGGTGCGAAACGGCCAGTCAAAGCTGTTGCCAAGCTGGAGCCAAAAAGAACCG
GAACTTCAAAACAAAACCCAGAGCTTCTAAAAGCTTCCAATCCACGGACTACATTTCAAAATAAGTGGTC
AGACCAACTGTCAGGTTTCTCTCTCCATGCAAATAAAGACAAAATGCACAATATCATGTTGTTACCTGAA
CCAAAGGAATACCAAAAAGATGTAGTTTGTATTCCAAATAAAATGACCCTGTCTGAGCCAAATGAAGTCA
ACCTATTTGAGAACAAAAATGTTGAAGTAGAAGTGTTATCCCCTGCAAAAGAACCTGTTCAGCCAGGTAT
GCCATTGACAGTTGTTGCACCAGCAGAACTAGTTGTCCCTGCAAACTGTTTAGCCCAGTTGATAGATGTG
AAGGTTGTCAATGGTACACAGCAGCTTGTTCTGAAACTGTTTCCGCTGGAAGAAAATAATTGCCTTGAAG
CTGGGAGGGATAATGGAGGTAATTCTGAACGTATGGTGAAAGAGAAGGGTTCAAATGAACAAGAAAAAGT
ACTTTCTGCAGAAAAAACAAAGTCACTGACAGTTGACGGGAATGTTGGAAAACTCGTAGGCATTGATAGT
TTTCAACCTTCAGTTCAGAAACAGCTTAAAAATGTGAAATGGGTAAGGTCTTATGATTTTATTATGCCAA
ATTCTAGTGTGCACAACAATGGAAAATCCTTCATTAATTCGGAAACAATTGAGGATTTTCAGAAAAAAAA
TAATTTGTATCCACATAGAACTGCTTTTCCTTCCGTTGCCTTAAAAGGTCATTCTCTAGCATCTGTATTT
AAAAACAGTGTTTTACGTAGTCTTGGAGCTGCATCAAACCCTTTTCCATATAAAGCTGCTGTTTGTTTTG
CTGAAAGTGGAAGAAATTTACACAGTAGCTCACAGCAGTTACTCCCATTTGCTGCATCACCTGCAACCTG
TTCCTTCTCTGGAGAAAAGGGCTTATTGCCTGTAAGTGAAAATGACTTGGAATCTACAAGTAAAGTCAAT
ATTCCTGTAAAAGTGGTTTCCTCTAATAGGAAGCAGGAAGATAACCAGACAGAGGAACACAAGGCAGTTT
CAACTGTAGGCCAGATTTCCTCTCAACATAAGAGTGAGTATTTACATATAAACATAACTGGAGAAGATAG
ATCTCAACAGCCTGGGGATAAGCCTTTGGAATTAAAGAATTCTGAAAGGACTAACAACACTAATGATGGC
CCAGTCATCTCATCAGTATTTTCTCTGAGCTCTGGATCTGAAAATGTCCCCGAGGGCATTAAGTGGAATA
GCTCAACGTCTAAAATAAAGTCAATTGAACTGTTGCGCAGAAAGATAGCTCAGTTAATTGAGTCCTGTGG
GAAGCCGTCATCTTTGGCTTCAAATAGTGCACATCGTCGCTCTGTAGGGCAGGCATCAAAGGGAACTTCA
AAAGCTACCTCTGAAGGTATTCAAGAAATCAACGTGTCACTCACTGGTCTTGGCCATTCCACAGGTACTC
TTCAGAAACCTCCGAATGATGGTGGTATTACTGGTAATAGACAGCTTACTCATCAACAAATATATCCACA
CTTTGCAGATGGCAGTAATAGGAAAACCAAAAGCAGAGTGGCCAGGAAGGCTCATGTTGCCACGCCAGTG
TTAATCCCCAAAGGGGCTGTGTTGAGGGTTCTTAATTCCTCTGAGAATGCCCACATCATAGAGGCTACAT
GTGAAGCACCTGTCAGCATACCTTGCAGTGAAAGACAGTTAATAAAACCAGTTCCATTTTGCCCTGTGAG
ACAGGCGGACTCAGACTTACAGCCTTTAAGAAGTGAAAGGGGGCCAATAGATATGTCCCCAAATATCGAG
ACACCTCTGCGGCCTAAACTGAGAAAAGAGAGTGCTGTCTGTAGCACCATCCATAGAAAAACTGGCCTCT
TGTATGGACAGCAAGGAAGCAGTGAATTAAATAAGCAAGGGAGACTGCTTTCCAGAAGTCTTTCTATAAG
TAGAAATAAAACCAAACAAGTACACTTATCCAGGAAGAAAAACAAAATTCAAGCTGAACCTAGCCGCTGT
CTCAAGGATCCTTCAATTTTTCAGGTTGCAAGGCAACTAAGACTGATAGCAGCTAAGCCAGATCAGTTGA
TTAAGTGTCCCCGTCGGAACCAGCCAGTCATTGTGTTAAACCACCCTGATGTGGACTCGCCAGAAGTGAC
CAATGTGATGAAGGTAATAAATAAATACAAAGGCAATGTCCTCAAAGTTGTTTTATCAGAGAGGACTAGG
TGTCAGCTAGGCATCAGACGGCATCATGTACGCCTGACCTACCAGAATGCGGAAGAAGCCAGTCAAATTA
AAAGGCAAATGATGTTGAAAATGAAACTCAAAAAAGTTCATAAAAACAACTACCAGGTAGTGGATTCCTT
GCCTGATGATTCTTCACAGTGTGTATTTAAGTGCTGGTTTTGTGGGCGACTGTATGAAGACCAGGAAGAG
TGGATGAGTCATGGCCAACGGCATTTGATAGAAGCAACTAGAGATTGGGATGTTCTTTCCTCCAAGGGCA
AATAA

Translation (1074 aa):
MKDIGQQLYTTHLNGGHNSLTMSPKQPDANGAPRPNRQEAQTLLYQGSEAEAAMMTIATCAKCKSVHKIS
LQDLQKGTGKDGMYVCFQCSLGAAPPNFHFVSNNSSATHVGNKTENFSSSVNSKFKVRNFKPGKYYCDKC
RFSTKDPLQYKKHTLQHEEIKFICSHCSYISYTKGEFQRHLVKHTGIFPYQCEYCDYGAIRNDYIVKHTK
RVHERAGAKRPVKAVAKLEPKRTGTSKQNPELLKASNPRTTFQNKWSDQLSGFSLHANKDKMHNIMLLPE
PKEYQKDVVCIPNKMTLSEPNEVNLFENKNVEVEVLSPAKEPVQPGMPLTVVAPAELVVPANCLAQLIDV
KVVNGTQQLVLKLFPLEENNCLEAGRDNGGNSERMVKEKGSNEQEKVLSAEKTKSLTVDGNVGKLVGIDS
FQPSVQKQLKNVKWVRSYDFIMPNSSVHNNGKSFINSETIEDFQKKNNLYPHRTAFPSVALKGHSLASVF
KNSVLRSLGAASNPFPYKAAVCFAESGRNLHSSSQQLLPFAASPATCSFSGEKGLLPVSENDLESTSKVN
IPVKVVSSNRKQEDNQTEEHKAVSTVGQISSQHKSEYLHINITGEDRSQQPGDKPLELKNSERTNNTNDG
PVISSVFSLSSGSENVPEGIKWNSSTSKIKSIELLRRKIAQLIESCGKPSSLASNSAHRRSVGQASKGTS
KATSEGIQEINVSLTGLGHSTGTLQKPPNDGGITGNRQLTHQQIYPHFADGSNRKTKSRVARKAHVATPV
LIPKGAVLRVLNSSENAHIIEATCEAPVSIPCSERQLIKPVPFCPVRQADSDLQPLRSERGPIDMSPNIE
TPLRPKLRKESAVCSTIHRKTGLLYGQQGSSELNKQGRLLSRSLSISRNKTKQVHLSRKKNKIQAEPSRC
LKDPSIFQVARQLRLIAAKPDQLIKCPRRNQPVIVLNHPDVDSPEVTNVMKVINKYKGNVLKVVLSERTR
CQLGIRRHHVRLTYQNAEEASQIKRQMMLKMKLKKVHKNNYQVVDSLPDDSSQCVFKCWFCGRLYEDQEE
WMSHGQRHLIEATRDWDVLSSKGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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