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Report for CCDS75642.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75642.1 Public Homo sapiens 7 STAG3 24 110 108 CCDS HistoryNCBI Gene:10734Re-query CCDS DB by CCDS ID:75642.1Re-query CCDS DB by GeneID:10734See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75642.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000615138.5 ENSP00000477973.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000615138.5Link to Ensembl Protein Viewer:ENSP00000477973.1Re-query CCDS DB by Nucleotide ID:ENST00000615138Re-query CCDS DB by Protein ID:ENSP00000477973
Original member Current member NCBI NM_001282717.2 NP_001269646.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001282717.2Link to Protein Sequence:NP_001269646.1Re-query CCDS DB by Nucleotide ID:NM_001282717Re-query CCDS DB by Protein ID:NP_001269646Link to BLAST:NP_001269646.1
Original member Current member NCBI NM_001375438.1 NP_001362367.1 Accepted alive Link to Nucleotide Sequence:NM_001375438.1Link to Protein Sequence:NP_001362367.1Re-query CCDS DB by Nucleotide ID:NM_001375438Re-query CCDS DB by Protein ID:NP_001362367Link to BLAST:NP_001362367.1

Chromosomal Locations for CCDS 75642.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 100180557 100180672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100182090 100182192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100182723 100182839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100186200 100186296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100188453 100188529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100188812 100189016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100189445 100189596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100195309 100195382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100197156 100197279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100197778 100197876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100198087 100198166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100198475 100198582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100198843 100198957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100199262 100199367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100199541 100199644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100200236 100200328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100200453 100200542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100200769 100200969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100201090 100201160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100201264 100201351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100201786 100201866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100201949 100202041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100202172 100202340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100202454 100202590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100204021 100204122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100204627 100204775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100205005 100205133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100205227 100205384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100211011 100211185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100211435 100211539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100211795 100211876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100213735 100213806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100214007 100214015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3681 nt):
ATGTCTTCCCCGTTGCAAAGAGCTGTGGGAGATACCAAGAGGGCCTTGTCTGCATCTTCTAGTTCCTCTG
CCAGTCTACCCTTTGATGACAGGGACTCAAACCATACCTCAGAGGGGAATGGCGACTCTTTGTTAGCTGA
TGAAGACACTGACTTTGAAGACAGCTTGAATCGCAATGTGAAGAAGAGAGCAGCAAAACGACCACCGAAA
ACAACACCGGTGGCAAAACATCCAAAGAAAGGGTCCCGAGTGGTACATCGTCATAGCCGGAAACAGTCAG
AGCCACCAGCCAATGATCTTTTCAATGCTGTGAAAGCCGCCAAAAGTGACATGCAGTCTTTGGTAGATGA
GTGGCTGGATAGCTACAAGCAAGACCAGGATGCAGGATTTCTGGAGCTTGTTAACTTTTTCATCCAATCT
TGCGGATGTAAAGGCATTGTGACCCCTGAGATGTTCAAGAAGATGTCCAACTCAGAGATCATCCAGCACC
TAACAGAGCAGTTTAATGAGGACTCGGGGGACTACCCTCTCATAGCTCCAGGTCCATCCTGGAAGAAGTT
CCAGGGCAGCTTCTGTGAATTTGTGAGGACATTGGTCTGTCAGTGCCAGTACAGCCTCCTCTATGATGGC
TTCCCTATGGACGACCTCATCTCCCTGCTCACTGGCCTCTCAGACTCACAAGTCCGCGCCTTCCGTCACA
CTAGCACCCTGGCTGCTATGAAACTGATGACCTCCCTGGTAAAAGTTGCCCTCCAACTGAGTGTGCACCA
AGATAACAATCAGCGTCAGTATGAGGCTGAAAGAAACAAGGGGCCAGGGCAGAGGGCACCTGAGCGGCTG
GAGAGCCTGTTGGAGAAACGCAAAGAGCTCCAAGAGCATCAAGAGGAGATTGAGGGGATGATGAATGCCC
TCTTCAGGGGTGTCTTTGTTCATCGGTACAGGGATGTCCTTCCTGAGATCCGTGCTATCTGCATTGAGGA
AATTGGGTGTTGGATGCAAAGCTACAGCACGTCTTTCCTCACCGACAGCTATTTAAAATATATTGGTTGG
ACTCTGCATGATAAGCACCGAGAAGTCCGCCTGAAGTGTGTGAAGGCCCTGAAAGGGCTGTACGGTAACC
GGGACCTGACCACACGCCTGGAGCTCTTCACCAGCCGCTTCAAGGACCGGATGGTTTCCATGGTCATGGA
CAGAGAGTATGATGTGGCAGTGGAGGCTGTCAGATTACTGATACTTATCCTTAAGAACATGGAAGGGGTG
CTGACGGACGCGGATTGTGAGAGCGTCTACCCAGTTGTGTATGCCTCTCATCGAGGCCTGGCCTCTGCCG
CAGGCGAATTTCTGTACTGGAAACTCTTCTACCCTGAGTGCGAGATAAGAATGATGGGTGGAAGAGAGCA
ACGCCAGAGCCCAGGCGCCCAGAGGACTTTCTTCCAGCTTCTGCTGTCCTTCTTTGTGGAGAGCGAGCTC
CATGACCACGCTGCTTACTTAGTAGACAGTCTGTGGGACTGTGCAGGGGCTCGGCTGAAGGACTGGGAGG
GTCTGACAAGCCTGCTGCTGGAGAAGGACCAGAACCTGGGTGATGTGCAGGAGAGCACACTGATAGAAAT
CCTTGTGTCCAGTGCCCGGCAAGCTTCAGAGGGGCACCCGCCTGTGGGCCGGGTCACTGGGAGGAAGGGC
TTAACCTCTAAGGAGCGCAAGACCCAAGCCGATGACAGGGTGAAGTTGACTGAGCACCTCATCCCCCTGC
TGCCCCAGCTCCTGGCCAAGTTCTCAGCTGATGCAGAGAAGGTCACTCCCCTGCTCCAGCTTCTCAGCTG
CTTTGACCTCCACATCTACTGCACTGGGCGCTTGGAGAAGCACCTGGAGCTGTTCCTGCAGCAACTCCAG
GAGGTGGTGGTGAAGCATGCAGAGCCAGCGGTGCTTGAGGCTGGGGCGCATGCCCTCTACCTGCTCTGTA
ATCCCGAATTCACTTTCTTCAGCCGGGCGGACTTTGCCCGCAGCCAGCTAGTAGATTTGCTGACTGACCG
CTTCCAGCAGGAGCTTGAAGAGCTGTTACAGTCGTCCTTCCTAGATGAGGATGAGGTATATAATCTGGCA
GCCACTCTGAAACGCCTCTCTGCCTTCTACAACACTCATGACCTGACTCGCTGGGAGCTCTATGAGCCAT
GTTGCCAACTCCTGCAGAAGGCTGTGGACACAGGAGAGGTTCCTCACCAGGTTATCCTGCCAGCCTTGAC
TCTTGTCTATTTTTCCATTCTCTGGACACTAACCCACATTTCTAAATCAGATGCTTCCCAGAAGCAGCTG
TCGAGTTTGAGGGACAGAATGGTGGCCTTCTGTGAACTCTGCCAGAGTTGCCTCTCAGATGTGGATACTG
AGATCCAGGAGCAGGCTTTTGTCTTATTAAGTGATCTACTTCTCATCTTTAGCCCTCAGATGATTGTTGG
GGGCCGTGATTTCCTTAGGCCACTTGTCTTTTTTCCTGAAGCTACTCTCCAGTCTGAGCTAGCCAGCTTC
CTCATGGACCACGTCTTCATCCAGCCGGGAGACCTGGGCAGTGGTGATTCCCAGGAGGATCATTTACAGA
TAGAGCGGCTACACCAGCGGCGCCGCCTCCTAGCCGGGTTCTGCAAGCTGTTGCTTTATGGGGTGCTGGA
GATGGATGCAGCCTCAGATGTTTTCAAACACTACAACAAGTTCTACAATGACTATGGTGACATTATCAAG
GAAACATTAACTAGAGCAAGGCAGATTGACCGAAGTCATTGTTCCCGAATCCTGCTGCTGAGCCTCAAGC
AGCTGTACACAGAACTGCTGCAGGAGCATGGGCCCCAGGGCCTGAATGAGCTTCCTGCCTTCATCGAGAT
GAGGGACCTGGCCCGGAGGTTTGCCTTGAGTTTTGGACCCCAGCAGCTGCAGAACCGTGACCTCGTGGTC
ATGCTACACAAGGAAGGCATCCAGTTCTCCTTGTCTGAGCTTCCTCCAGCTGGCTCCTCCAATCAGCCTC
CAAATCTGGCATTCCTGGAGCTCCTTTCAGAGTTTTCCCCCCGACTCTTCCATCAGGACAAGCAGCTTTT
ACTGTCCTATCTAGAAAAGTGCCTGCAGCATGTCTCCCAGGCACCTGGCCATCCCTGGGGCCCAGTCACC
ACCTACTGCCACTCCCTCAGCCCTGTGGAGAACACAGCAGAGACCAGCCCTCAGGTCCTCCCCAGCTCCA
AGAGGAGGCGCGTTGAAGGGCCTGCCAAGCCTAACAGAGAGGACGTCTCCTCGTCCCAGGAAGAAAGTCT
GCAGCTGAACAGCATCCCGCCCACGCCCACCCTCACCTCCACAGCTGTGAAGAGCAGGCAGCCCCTGTGG
GGGTTGAAAGAGATGGAGGAAGAAGATGGCTCAGAGTTGGATTTTGCCCAGGGCAGTCAGCCCGTCGCAG
GCACCGAGAGGTCAAGGTTCTTGGGTCCACAATATTTCCAGACTCCACACAACCCTTCAGGTCCTGGCCT
GGGCAACCAGCTGATGCGACTCAGCCTTATGGAAGAGGACGAGGAAGAAGAGTTAGAAATCCAGGATGAG
TCAAATGAAGAACGGCAGGATACAGACATGCAAGCAAGTAGCTACTCTTCCACCAGTGAGCGCGGGCTGG
ACCTCTTAGATTCTACAGAGCTGGATATTGAGGATTTCTGA

Translation (1226 aa):
MSSPLQRAVGDTKRALSASSSSSASLPFDDRDSNHTSEGNGDSLLADEDTDFEDSLNRNVKKRAAKRPPK
TTPVAKHPKKGSRVVHRHSRKQSEPPANDLFNAVKAAKSDMQSLVDEWLDSYKQDQDAGFLELVNFFIQS
CGCKGIVTPEMFKKMSNSEIIQHLTEQFNEDSGDYPLIAPGPSWKKFQGSFCEFVRTLVCQCQYSLLYDG
FPMDDLISLLTGLSDSQVRAFRHTSTLAAMKLMTSLVKVALQLSVHQDNNQRQYEAERNKGPGQRAPERL
ESLLEKRKELQEHQEEIEGMMNALFRGVFVHRYRDVLPEIRAICIEEIGCWMQSYSTSFLTDSYLKYIGW
TLHDKHREVRLKCVKALKGLYGNRDLTTRLELFTSRFKDRMVSMVMDREYDVAVEAVRLLILILKNMEGV
LTDADCESVYPVVYASHRGLASAAGEFLYWKLFYPECEIRMMGGREQRQSPGAQRTFFQLLLSFFVESEL
HDHAAYLVDSLWDCAGARLKDWEGLTSLLLEKDQNLGDVQESTLIEILVSSARQASEGHPPVGRVTGRKG
LTSKERKTQADDRVKLTEHLIPLLPQLLAKFSADAEKVTPLLQLLSCFDLHIYCTGRLEKHLELFLQQLQ
EVVVKHAEPAVLEAGAHALYLLCNPEFTFFSRADFARSQLVDLLTDRFQQELEELLQSSFLDEDEVYNLA
ATLKRLSAFYNTHDLTRWELYEPCCQLLQKAVDTGEVPHQVILPALTLVYFSILWTLTHISKSDASQKQL
SSLRDRMVAFCELCQSCLSDVDTEIQEQAFVLLSDLLLIFSPQMIVGGRDFLRPLVFFPEATLQSELASF
LMDHVFIQPGDLGSGDSQEDHLQIERLHQRRRLLAGFCKLLLYGVLEMDAASDVFKHYNKFYNDYGDIIK
ETLTRARQIDRSHCSRILLLSLKQLYTELLQEHGPQGLNELPAFIEMRDLARRFALSFGPQQLQNRDLVV
MLHKEGIQFSLSELPPAGSSNQPPNLAFLELLSEFSPRLFHQDKQLLLSYLEKCLQHVSQAPGHPWGPVT
TYCHSLSPVENTAETSPQVLPSSKRRRVEGPAKPNREDVSSSQEESLQLNSIPPTPTLTSTAVKSRQPLW
GLKEMEEEDGSELDFAQGSQPVAGTERSRFLGPQYFQTPHNPSGPGLGNQLMRLSLMEEDEEEELEIQDE
SNEERQDTDMQASSYSSTSERGLDLLDSTELDIEDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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