NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS11833.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11833.1 Public Homo sapiens 18 TGIF1 24 110 108 CCDS HistoryNCBI Gene:7050Re-query CCDS DB by CCDS ID:11833.1Re-query CCDS DB by GeneID:7050See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11833.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000343820.10 ENSP00000339631.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000343820.10Link to Ensembl Protein Viewer:ENSP00000339631.6Re-query CCDS DB by Nucleotide ID:ENST00000343820Re-query CCDS DB by Protein ID:ENSP00000339631
Original member Current member EBI ENST00000407501.6 ENSP00000384133.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000407501.6Link to Ensembl Protein Viewer:ENSP00000384133.2Re-query CCDS DB by Nucleotide ID:ENST00000407501Re-query CCDS DB by Protein ID:ENSP00000384133
Original member Current member NCBI NM_001278684.2 NP_001265613.1 Accepted alive Link to Nucleotide Sequence:NM_001278684.2Link to Protein Sequence:NP_001265613.1Re-query CCDS DB by Nucleotide ID:NM_001278684Re-query CCDS DB by Protein ID:NP_001265613Link to BLAST:NP_001265613.1
Original member Current member NCBI NM_003244.4 NP_003235.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003244.4Link to Protein Sequence:NP_003235.1Re-query CCDS DB by Nucleotide ID:NM_003244Re-query CCDS DB by Protein ID:NP_003235Link to BLAST:NP_003235.1
Original member Current member NCBI NM_173208.3 NP_775300.1 Accepted alive Link to Nucleotide Sequence:NM_173208.3Link to Protein Sequence:NP_775300.1Re-query CCDS DB by Nucleotide ID:NM_173208Re-query CCDS DB by Protein ID:NP_775300Link to BLAST:NP_775300.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265613.1 272 Q15583-2 272 100% 0 0
NP_003235.1 272 Q15583-2 272 100% 0 0
NP_775300.1 272 Q15583-2 272 100% 0 0

Chromosomal Locations for CCDS 11833.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 3450490 3450505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3456354 3456580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3457365 3457940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (819 nt):
ATGAAAGGCAAGAAAGGTATTGTTGCAGCATCTGGCAGTGAGACTGAGGATGAGGACAGCATGGACATTC
CCTTGGACCTTTCTTCATCCGCTGGCTCAGGCAAGAGAAGGAGAAGGGGCAACCTACCCAAGGAGTCTGT
GCAGATTCTTCGGGATTGGCTGTATGAGCACCGTTACAATGCCTATCCTTCAGAGCAAGAAAAAGCGTTG
CTGTCCCAGCAAACACACCTGTCTACGCTACAGGTCTGTAACTGGTTCATCAACGCCCGCCGCAGGCTCC
TCCCTGACATGCTGAGAAAGGATGGCAAAGATCCAAATCAGTTCACAATTTCCCGCCGTGGGGCCAAGAT
TTCTGAAACGAGCTCTGTGGAGTCCGTGATGGGCATCAAAAACTTCATGCCAGCTCTAGAGGAGACCCCA
TTTCATTCCTGTACAGCTGGGCCAAACCCAACCCTAGGGAGGCCACTGTCTCCTAAGCCGTCATCCCCGG
GATCAGTTTTGGCTCGTCCATCAGTGATCTGCCATACCACTGTGACTGCATTGAAAGATGTCCCTTTCTC
TCTCTGCCAGTCGGTCGGTGTGGGACAAAACACAGATATACAGCAGATAGCGGCCAAAAACTTCACAGAC
ACCTCTCTCATGTACCCAGAGGACACTTGTAAATCTGGACCAAGTACGAATACACAGAGTGGTCTTTTCA
ACACTCCTCCCCCTACTCCACCGGACCTCAACCAGGACTTCAGTGGATTTCAGCTTCTAGTGGATGTTGC
ACTCAAACGGGCTGCAGAGATGGAGCTTCAGGCAAAACTTACAGCTTAA

Translation (272 aa):
MKGKKGIVAASGSETEDEDSMDIPLDLSSSAGSGKRRRRGNLPKESVQILRDWLYEHRYNAYPSEQEKAL
LSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRRGAKISETSSVESVMGIKNFMPALEETP
FHSCTAGPNPTLGRPLSPKPSSPGSVLARPSVICHTTVTALKDVPFSLCQSVGVGQNTDIQQIAAKNFTD
TSLMYPEDTCKSGPSTNTQSGLFNTPPPTPPDLNQDFSGFQLLVDVALKRAAEMELQAKLTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH