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Report for CCDS55101.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55101.1 Public Homo sapiens 7 NT5C3A 24 110 108 CCDS HistoryNCBI Gene:51251Re-query CCDS DB by CCDS ID:55101.1Re-query CCDS DB by GeneID:51251See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55101.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409467.6 ENSP00000387166.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409467.6Link to Ensembl Protein Viewer:ENSP00000387166.1Re-query CCDS DB by Nucleotide ID:ENST00000409467Re-query CCDS DB by Protein ID:ENSP00000387166
Original member Current member NCBI NM_001166118.3 NP_001159590.1 Accepted alive Link to Nucleotide Sequence:NM_001166118.3Link to Protein Sequence:NP_001159590.1Re-query CCDS DB by Nucleotide ID:NM_001166118Re-query CCDS DB by Protein ID:NP_001159590Link to BLAST:NP_001159590.1
Original member Current member NCBI NM_001356996.3 NP_001343925.1 Accepted alive Link to Nucleotide Sequence:NM_001356996.3Link to Protein Sequence:NP_001343925.1Re-query CCDS DB by Nucleotide ID:NM_001356996Re-query CCDS DB by Protein ID:NP_001343925Link to BLAST:NP_001343925.1
Original member Current member NCBI NM_001374336.1 NP_001361265.1 Accepted alive Link to Nucleotide Sequence:NM_001374336.1Link to Protein Sequence:NP_001361265.1Re-query CCDS DB by Nucleotide ID:NM_001374336Re-query CCDS DB by Protein ID:NP_001361265Link to BLAST:NP_001361265.1
Original member Current member NCBI NM_001374337.1 NP_001361266.1 Accepted alive Link to Nucleotide Sequence:NM_001374337.1Link to Protein Sequence:NP_001361266.1Re-query CCDS DB by Nucleotide ID:NM_001374337Re-query CCDS DB by Protein ID:NP_001361266Link to BLAST:NP_001361266.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159590.1 285 Q9H0P0-3 285 100% 0 0
NP_001343925.1 285 Q9H0P0-3 285 100% 0 0
NP_001361265.1 285 Q9H0P0-3 285 100% 0 0
NP_001361266.1 285 Q9H0P0-3 285 100% 0 0

Chromosomal Locations for CCDS 55101.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 33014730 33014831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33015670 33015870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33017439 33017601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33019635 33019724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33021272 33021357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33022053 33022099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33024039 33024108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33026817 33026915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (858 nt):
ATGCCAGAATTCCAGAAAAGTTCAGTTCGAATCAAGAACCCTACAAGAGTAGAAGAAATTATCTGTGGTC
TTATCAAAGGAGGAGCTGCCAAACTTCAGATAATAACGGACTTTGATATGACACTCAGTAGATTTTCATA
TAAAGGGAAAAGATGCCCAACATGTCATAATATCATTGACAACTGTAAGCTGGTTACAGATGAATGTAGA
AAAAAGTTATTGCAACTAAAGGAAAAATATTACGCTATTGAAGTTGATCCTGTTCTTACTGTAGAAGAGA
AGTACCCTTATATGGTGGAATGGTATACTAAATCACATGGTTTGCTTGTTCAGCAAGCTTTACCAAAAGC
TAAACTTAAAGAAATTGTGGCAGAATCTGACGTTATGCTCAAAGAAGGATATGAGAATTTCTTTGATAAG
CTCCAACAACATAGCATCCCCGTGTTCATATTTTCGGCTGGAATCGGCGATGTACTAGAGGAAGTTATTC
GTCAAGCTGGTGTTTATCATCCCAATGTCAAAGTTGTGTCCAATTTTATGGATTTTGATGAAACTGGGGT
GCTCAAAGGATTTAAAGGAGAACTAATTCATGTATTTAACAAACATGATGGTGCCTTGAGGAATACAGAA
TATTTCAATCAACTAAAAGACAATAGTAACATAATTCTTCTGGGAGACTCCCAAGGAGACTTAAGAATGG
CAGATGGAGTGGCCAATGTTGAGCACATTCTGAAAATTGGATATCTAAATGATAGAGTGGATGAGCTTTT
AGAAAAGTACATGGACTCTTATGATATTGTTTTAGTACAAGATGAATCATTAGAAGTAGCCAACTCTATT
TTACAGAAGATTCTATAA

Translation (285 aa):
MPEFQKSSVRIKNPTRVEEIICGLIKGGAAKLQIITDFDMTLSRFSYKGKRCPTCHNIIDNCKLVTDECR
KKLLQLKEKYYAIEVDPVLTVEEKYPYMVEWYTKSHGLLVQQALPKAKLKEIVAESDVMLKEGYENFFDK
LQQHSIPVFIFSAGIGDVLEEVIRQAGVYHPNVKVVSNFMDFDETGVLKGFKGELIHVFNKHDGALRNTE
YFNQLKDNSNIILLGDSQGDLRMADGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLVQDESLEVANSI
LQKIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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