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Report for CCDS25668.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25668.1 Public Mus musculus 11 Sphk1 23 108 98 CCDS HistoryNCBI Gene:20698Re-query CCDS DB by CCDS ID:25668.1Re-query CCDS DB by GeneID:20698See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25668.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063396.9 ENSMUSP00000064743.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063396.9Link to Ensembl Protein Viewer:ENSMUSP00000064743.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000063396Re-query CCDS DB by Protein ID:ENSMUSP00000064743
Original member Current member EBI ENSMUST00000063446.12 ENSMUSP00000067865.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063446.12Link to Ensembl Protein Viewer:ENSMUSP00000067865.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000063446Re-query CCDS DB by Protein ID:ENSMUSP00000067865
Original member Current member EBI ENSMUST00000106386.7 ENSMUSP00000101994.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106386.7Link to Ensembl Protein Viewer:ENSMUSP00000101994.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106386Re-query CCDS DB by Protein ID:ENSMUSP00000101994
Original member Current member EBI ENSMUST00000106387.8 ENSMUSP00000101995.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106387.8Link to Ensembl Protein Viewer:ENSMUSP00000101995.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106387Re-query CCDS DB by Protein ID:ENSMUSP00000101995
Original member Current member EBI ENSMUST00000106388.8 ENSMUSP00000101996.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106388.8Link to Ensembl Protein Viewer:ENSMUSP00000101996.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106388Re-query CCDS DB by Protein ID:ENSMUSP00000101996
Original member NCBI NM_001172472.1 NP_001165943.1 Updated not alive Link to Nucleotide Sequence:NM_001172472.1Link to Protein Sequence:NP_001165943.1Re-query CCDS DB by Nucleotide ID:NM_001172472Re-query CCDS DB by Protein ID:NP_001165943
Current member NCBI NM_001172472.2 NP_001165943.1 Accepted alive Link to Nucleotide Sequence:NM_001172472.2Link to Protein Sequence:NP_001165943.1Re-query CCDS DB by Nucleotide ID:NM_001172472Re-query CCDS DB by Protein ID:NP_001165943Link to BLAST:NP_001165943.1
Original member Current member NCBI NM_001172473.1 NP_001165944.1 Accepted alive Link to Nucleotide Sequence:NM_001172473.1Link to Protein Sequence:NP_001165944.1Re-query CCDS DB by Nucleotide ID:NM_001172473Re-query CCDS DB by Protein ID:NP_001165944Link to BLAST:NP_001165944.1
Current member NCBI NM_001372484.1 NP_001359413.1 Accepted alive Link to Nucleotide Sequence:NM_001372484.1Link to Protein Sequence:NP_001359413.1Re-query CCDS DB by Nucleotide ID:NM_001372484Re-query CCDS DB by Protein ID:NP_001359413Link to BLAST:NP_001359413.1
Current member NCBI NM_001372486.1 NP_001359415.1 Accepted alive Link to Nucleotide Sequence:NM_001372486.1Link to Protein Sequence:NP_001359415.1Re-query CCDS DB by Nucleotide ID:NM_001372486Re-query CCDS DB by Protein ID:NP_001359415Link to BLAST:NP_001359415.1
Original member NCBI NM_025367.6 NP_079643.2 Updated not alive Link to Nucleotide Sequence:NM_025367.6Link to Protein Sequence:NP_079643.2Re-query CCDS DB by Nucleotide ID:NM_025367Re-query CCDS DB by Protein ID:NP_079643
Current member NCBI NM_025367.7 NP_079643.2 Accepted alive Link to Nucleotide Sequence:NM_025367.7Link to Protein Sequence:NP_079643.2Re-query CCDS DB by Nucleotide ID:NM_025367Re-query CCDS DB by Protein ID:NP_079643Link to BLAST:NP_079643.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165943.1 382 Q8CI15-1 382 100% 0 0
NP_001165944.1 382 Q8CI15-1 382 100% 0 0
NP_001359413.1 382 Q8CI15-1 382 100% 0 0
NP_001359415.1 382 Q8CI15-1 382 100% 0 0
NP_079643.2 382 Q8CI15-1 382 100% 0 0

Chromosomal Locations for CCDS 25668.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 116534164 116534173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116534849 116535001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116535080 116535174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116535252 116535367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116535612 116536386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1149 nt):
ATGGAACCAGTAGAATGCCCTCGAGGACTGCTCCCACGGCCATGCAGAGTGCTGGTGCTGCTGAACCCCC
AGGGTGGCAAGGGCAAGGCTCTGCAGCTCTTCCAGAGCCGTGTGCAGCCCTTCCTGGAGGAGGCAGAGAT
AACCTTTAAACTGATACTCACCGAACGGAAGAACCATGCCAGGGAGCTGGTGTGTGCAGAGGAGTTGGGT
CACTGGGACGCCCTGGCAGTCATGTCCGGTGATGGTCTGATGCATGAGGTGGTGAATGGGCTAATGGAAC
GGCCAGACTGGGAGACTGCCATCCAGAAACCCCTGTGTAGCCTCCCTGGAGGCTCCGGCAATGCGCTGGC
AGCTTCTGTGAACCACTATGCTGGGTACGAGCAGGTGACTAATGAAGACCTGCTCATCAACTGCACACTG
CTGTTGTGCCGCCGGCGCCTGTCACCCATGAACCTGCTGTCCCTGCACACTGCTTCTGGGCTGCGGCTCT
ATTCTGTGCTCAGTCTGTCCTGGGGCTTTGTTGCTGACGTGGACCTCGAGAGTGAGAAGTACAGGCGCTT
GGGGGAGATTCGTTTCACAGTGGGCACCTTCTTTCGCCTAGCAAGCCTGCGCATCTACCAAGGCCAACTG
GCCTACCTTCCTGTAGGAACTGTGGCCTCTAAGAGACCCGCCTCTACACTGGTGCAGAAGGGCCCCGTCG
ACACACACCTTGTTCCTCTGGAGGAGCCAGTGCCTTCTCATTGGACTGTGGTACCAGAACAGGACTTCGT
CCTGGTGCTGGTGCTGCTACACACCCACCTGAGCTCCGAGCTGTTTGCAGCACCCATGGGCCGCTGTGAG
GCTGGTGTTATGCATCTGTTCTACGTACGTGCGGGGGTGTCAAGGGCTGCGCTGCTGCGCCTCTTCCTGG
CCATGCAGAAGGGCAAGCATATGGAACTTGACTGTCCATACCTGGTTCATGTGCCCGTGGTTGCTTTCCG
CCTGGAGCCCAGGAGCCAGAGGGGCGTGTTTTCTGTGGATGGAGAGCTGATGGTATGTGAAGCTGTGCAG
GGCCAAGTGCACCCAAACTACCTTTGGATGGTCTGTGGCAGCAGAGATGCCCCATCCGGCCGGGACTCCC
GGCGGGGGCCACCTCCAGAAGAACCATAA

Translation (382 aa):
MEPVECPRGLLPRPCRVLVLLNPQGGKGKALQLFQSRVQPFLEEAEITFKLILTERKNHARELVCAEELG
HWDALAVMSGDGLMHEVVNGLMERPDWETAIQKPLCSLPGGSGNALAASVNHYAGYEQVTNEDLLINCTL
LLCRRRLSPMNLLSLHTASGLRLYSVLSLSWGFVADVDLESEKYRRLGEIRFTVGTFFRLASLRIYQGQL
AYLPVGTVASKRPASTLVQKGPVDTHLVPLEEPVPSHWTVVPEQDFVLVLVLLHTHLSSELFAAPMGRCE
AGVMHLFYVRAGVSRAALLRLFLAMQKGKHMELDCPYLVHVPVVAFRLEPRSQRGVFSVDGELMVCEAVQ
GQVHPNYLWMVCGSRDAPSGRDSRRGPPPEEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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