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Report for CCDS2111.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2111.1 Public Homo sapiens 2 IL36RN 24 110 108 CCDS HistoryNCBI Gene:26525Re-query CCDS DB by CCDS ID:2111.1Re-query CCDS DB by GeneID:26525See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2111.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000346807.7 ENSP00000259212.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000346807.7Link to Ensembl Protein Viewer:ENSP00000259212.3Re-query CCDS DB by Nucleotide ID:ENST00000346807Re-query CCDS DB by Protein ID:ENSP00000259212
Original member Current member EBI ENST00000393200.7 ENSP00000376896.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000393200.7Link to Ensembl Protein Viewer:ENSP00000376896.2Re-query CCDS DB by Nucleotide ID:ENST00000393200Re-query CCDS DB by Protein ID:ENSP00000376896
Original member Current member EBI ENST00000437409.2 ENSP00000409262.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000437409.2Link to Ensembl Protein Viewer:ENSP00000409262.2Re-query CCDS DB by Nucleotide ID:ENST00000437409Re-query CCDS DB by Protein ID:ENSP00000409262
Original member Current member NCBI NM_012275.3 NP_036407.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012275.3Link to Protein Sequence:NP_036407.1Re-query CCDS DB by Nucleotide ID:NM_012275Re-query CCDS DB by Protein ID:NP_036407Link to BLAST:NP_036407.1
Original member Current member NCBI NM_173170.1 NP_775262.1 Accepted alive Link to Nucleotide Sequence:NM_173170.1Link to Protein Sequence:NP_775262.1Re-query CCDS DB by Nucleotide ID:NM_173170Re-query CCDS DB by Protein ID:NP_775262Link to BLAST:NP_775262.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036407.1 155 Q9UBH0 155 100% 0 0
NP_775262.1 155 Q9UBH0 155 100% 0 0

Chromosomal Locations for CCDS 2111.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 113059439 113059467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113060852 113060937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113062124 113062251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113062453 113062677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (468 nt):
ATGGTCCTGAGTGGGGCGCTGTGCTTCCGAATGAAGGACTCGGCATTGAAGGTGCTTTATCTGCATAATA
ACCAGCTTCTAGCTGGAGGGCTGCATGCAGGGAAGGTCATTAAAGGTGAAGAGATCAGCGTGGTCCCCAA
TCGGTGGCTGGATGCCAGCCTGTCCCCCGTCATCCTGGGTGTCCAGGGTGGAAGCCAGTGCCTGTCATGT
GGGGTGGGGCAGGAGCCGACTCTAACACTAGAGCCAGTGAACATCATGGAGCTCTATCTTGGTGCCAAGG
AATCCAAGAGCTTCACCTTCTACCGGCGGGACATGGGGCTCACCTCCAGCTTCGAGTCGGCTGCCTACCC
GGGCTGGTTCCTGTGCACGGTGCCTGAAGCCGATCAGCCTGTCAGACTCACCCAGCTTCCCGAGAATGGT
GGCTGGAATGCCCCCATCACAGACTTCTACTTCCAGCAGTGTGACTAG

Translation (155 aa):
MVLSGALCFRMKDSALKVLYLHNNQLLAGGLHAGKVIKGEEISVVPNRWLDASLSPVILGVQGGSQCLSC
GVGQEPTLTLEPVNIMELYLGAKESKSFTFYRRDMGLTSSFESAAYPGWFLCTVPEADQPVRLTQLPENG
GWNAPITDFYFQQCD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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