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Report for CCDS16916.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16916.1 Public Mus musculus 2 Dnmt3b 23 108 98 CCDS HistoryNCBI Gene:13436Re-query CCDS DB by CCDS ID:16916.1Re-query CCDS DB by GeneID:13436See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16916.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103150.9 ENSMUSP00000099439.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103150.9Link to Ensembl Protein Viewer:ENSMUSP00000099439.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103150Re-query CCDS DB by Protein ID:ENSMUSP00000099439
Original member Current member EBI ENSMUST00000103151.7 ENSMUSP00000099440.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103151.7Link to Ensembl Protein Viewer:ENSMUSP00000099440.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000103151Re-query CCDS DB by Protein ID:ENSMUSP00000099440
Original member NCBI NM_001271747.1 NP_001258676.1 Updated not alive Link to Nucleotide Sequence:NM_001271747.1Link to Protein Sequence:NP_001258676.1Re-query CCDS DB by Nucleotide ID:NM_001271747Re-query CCDS DB by Protein ID:NP_001258676
Current member NCBI NM_001271747.2 NP_001258676.1 Accepted alive Link to Nucleotide Sequence:NM_001271747.2Link to Protein Sequence:NP_001258676.1Re-query CCDS DB by Nucleotide ID:NM_001271747Re-query CCDS DB by Protein ID:NP_001258676Link to BLAST:NP_001258676.1
Original member NCBI NM_010068.5 NP_034198.3 Updated not alive Link to Nucleotide Sequence:NM_010068.5Link to Protein Sequence:NP_034198.3Re-query CCDS DB by Nucleotide ID:NM_010068Re-query CCDS DB by Protein ID:NP_034198
Current member NCBI NM_010068.6 NP_034198.3 Accepted alive Link to Nucleotide Sequence:NM_010068.6Link to Protein Sequence:NP_034198.3Re-query CCDS DB by Nucleotide ID:NM_010068Re-query CCDS DB by Protein ID:NP_034198Link to BLAST:NP_034198.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258676.1 776 O88509-3 776 100% 0 0
NP_034198.3 776 O88509-3 776 100% 0 0

Chromosomal Locations for CCDS 16916.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 153661431 153661602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153662143 153662204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153662714 153662833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153665252 153665377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153665907 153666101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153667504 153667662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153669748 153669855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153670303 153670447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153672216 153672335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153672496 153672540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153673987 153674066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153674349 153674461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153674858 153675044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153675729 153675813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153676696 153676841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153677171 153677261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153677511 153677659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153678471 153678556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153686258 153686399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2331 nt):
ATGAAGGGAGACAGCAGACATCTGAATGAAGAAGAGGGTGCCAGCGGGTATGAGGAGTGCATTATCGTTA
AT
GGGAACTTCAGTGACCAGTCCTCAGACACGAAGGATGCTCCCTCACCCCCAGTCTTGGAGGCAATCTG
C
ACAGAGCCAGTCTGCACACCAGAGACCAGAGGCCGCAGGTCAAGCTCCCGGCTGTCTAAGAGGGAGGTC
TCC
AGCCTTCTGAATTACACGCAGGACATGACAGGAGATGGAGACAGAGATGATGAAGTAGATGATGGGA
AT
GGCTCTGATATTCTAATGCCAAAGCTCACCCGTGAGACCAAGGACACCAGGACGCGCTCTGAAAGCCC
G
GCTGTCCGAACCCGACATAGCAATGGGACCTCCAGCTTGGAGAGGCAAAGAGCCTCCCCCAGAATCACC
CGA
GGTCGGCAGGGCCGCCACCATGTGCAGGAGTACCCTGTGGAGTTTCCGGCTACCAGGTCTCGGAGAC
GT
CGAGCATCATCTTCAGCAAGCACGCCATGGTCATCCCCTGCCAGCGTCGACTTCATGGAAGAAGTGAC
A
CCTAAGAGCGTCAGTACCCCATCAGTTGACTTGAGCCAGGATGGAGATCAGGAGGGTATGGATACCACA
CAG
GTGGATGCAGAGAGCAGAGATGGAGACAGCACAGAGTATCAGGATGATAAAGAGTTTGGAATAGGTG
AC
CTCGTGTGGGGAAAGATCAAGGGCTTCTCCTGGTGGCCTGCCATGGTGGTGTCCTGGAAAGCCACCTC
C
AAGCGACAGGCCATGCCCGGAATGCGCTGGGTACAGTGGTTTGGTGATGGCAAGTTTTCTGAGATCTCT
GCT
GACAAACTGGTGGCTCTGGGGCTGTTCAGCCAGCACTTTAATCTGGCTACCTTCAATAAGCTGGTTT
CT
TATAGGAAGGCCATGTACCACACTCTGGAGAAAGCCAGGGTTCGAGCTGGCAAGACCTTCTCCAGCAG
T
CCTGGAGAGTCACTGGAGGACCAGCTGAAGCCCATGCTGGAGTGGGCCCACGGTGGCTTCAAGCCTACT
GGG
ATCGAGGGCCTCAAACCCAACAAGAAGCAACCAGAGAACAAAAGTCGAAGACGCACAACCAATGACT
CT
GCTGCTTCTGAGTCCCCCCCACCCAAGCGCCTCAAGACAAATAGCTATGGCGGGAAGGACCGAGGGGA
G
GATGAGGAGAGCCGAGAACGGATGGCTTCTGAAGTCACCAACAACAAGGGCAATCTGGAAGACCGCTGT
TTG
TCCTGTGGAAAGAAGAACCCTGTGTCCTTCCACCCCCTCTTTGAGGGTGGGCTCTGTCAGAGTTGCC
GG
GATCGCTTCCTAGAGCTCTTCTACATGTATGATGAGGACGGCTATCAGTCCTACTGCACCGTGTGCTG
T
GAGGGCCGTGAACTGCTGCTGTGCAGTAACACAAGCTGCTGCAGATGCTTCTGTGTGGAGTGTCTGGAG
GTG
CTGGTGGGCGCAGGCACAGCTGAGGATGCCAAGCTGCAGGAACCCTGGAGCTGCTATATGTGCCTCC
CT
CAGCGCTGCCATGGGGTCCTCCGACGCAGGAAAGATTGGAACATGCGCCTGCAAGACTTCTTCACTAC
T
GATCCTGACCTGGAAGAATTTGAGCCACCCAAGTTGTACCCAGCAATTCCTGCAGCCAAAAGGAGGCCC
ATT
AGAGTCCTGTCTCTGTTTGATGGAATTGCAACGGGGTACTTGGTGCTCAAGGAGTTGGGTATTAAAG
TG
GAAAAGTACATTGCCTCCGAAGTCTGTGCAGAGTCCATCGCTGTGGGAACTGTTAAGCATGAAGGCCA
G
ATCAAATATGTCAATGACGTCCGGAAAATCACCAAGAAAAATATTGAAGAGTGGGGCCCGTTCGACTTG
GTG
ATTGGTGGAAGCCCATGCAATGATCTCTCTAACGTCAATCCTGCCCGCAAAGGTTTATATGAGGGCA
CA
GGAAGGCTCTTCTTCGAGTTTTACCACTTGCTGAATTATACCCGCCCCAAGGAGGGCGACAACCGTCC
A
TTCTTCTGGATGTTCGAGAATGTTGTGGCCATGAAAGTGAATGACAAGAAAGACATCTCAAGATTCCTG
GCA
TGTAACCCAGTGATGATCGATGCCATCAAGGTGTCTGCTGCTCACAGGGCCCGGTACTTCTGGGGTA
AC
CTACCCGGAATGAACAGGATCTTCGGCTTCCCTGCTCACTACACGGACGTGTCCAACATGGGCCGCGG
C
GCCCGTCAGAAGCTGCTGGGCAGGTCCTGGAGTGTACCGGTCATCAGACACCTGTTTGCCCCCTTGAAG
GAC
TACTTTGCCTGTGAATAG


Translation (776 aa):
MKGDSRHLNEEEGASGYEECIIVNGNFSDQSSDTKDAPSPPVLEAICTEPVCTPETRGRRSSSRLSKREV
S
SLLNYTQ
DMTGDGDRDDEVDDGNGSDILMPKLTRETKDTRTRSESPAVRTRHSNGTSSLERQRASPRIT
R
GRQGRHHVQEYPVEFPATR
SRRRRASSSASTPWSSPASVDFMEEVTPKSVSTPSVDLSQDGDQEGMDTT
Q
VDAESRDGDSTEYQ
DDKEFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMPGMRWVQWFGDGKFSEIS
A
DKLVALGLFSQHFNLATFNKLVSYRKAMYHTLE
KARVRAGKTFSSSPGESLEDQLKPMLEWAHGGFKPT
G
IEGLKPNKKQP
ENKSRRRTTNDSAASESPPPKRLKTNSYGGKDRGEDEESRERMASEVTNNKGNLEDRC
L
SCGKKNPVSFHPLFEGGLCQSCR
DRFLELFYMYDEDGYQSYCTVCCEGRELLLCSNTSCCRCFCVECLE
V
LVGAGTAEDAKLQEPWSCYMCLPQRCHGVLRRRKDWNMRLQDFFTTDPDLEEF
EPPKLYPAIPAAKRRP
I
RVLSLFDGIAT
GYLVLKELGIKVEKYIASEVCAESIAVGTVKHEGQIKYVNDVRKITKKNIEEWGPFDL
V
IGGSPCNDLSNVNPARKGLY
EGTGRLFFEFYHLLNYTRPKEGDNRPFFWMFENVVAMKVNDKKDISRFL
A
CNPVMIDAIKVSAAHRARYFWGNLPGMNRIFGFPAHYTDVSNMGRGARQKLLGRSWSVPVIRHLFAPLK
D
YFACE




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser