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Report for CCDS8068.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8068.1 Public Homo sapiens 11 TRMT112 24 110 108 CCDS HistoryNCBI Gene:51504Re-query CCDS DB by CCDS ID:8068.1Re-query CCDS DB by GeneID:51504See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8068.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000544844.6 ENSP00000438349.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000544844.6Link to Ensembl Protein Viewer:ENSP00000438349.2Re-query CCDS DB by Nucleotide ID:ENST00000544844Re-query CCDS DB by Protein ID:ENSP00000438349
Original member Current member NCBI NM_001372071.1 NP_001359000.1 Accepted alive Link to Nucleotide Sequence:NM_001372071.1Link to Protein Sequence:NP_001359000.1Re-query CCDS DB by Nucleotide ID:NM_001372071Re-query CCDS DB by Protein ID:NP_001359000Link to BLAST:NP_001359000.1
Original member Current member NCBI NM_001372072.1 NP_001359001.1 Accepted alive Link to Nucleotide Sequence:NM_001372072.1Link to Protein Sequence:NP_001359001.1Re-query CCDS DB by Nucleotide ID:NM_001372072Re-query CCDS DB by Protein ID:NP_001359001Link to BLAST:NP_001359001.1
Original member Current member NCBI NM_016404.3 NP_057488.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016404.3Link to Protein Sequence:NP_057488.1Re-query CCDS DB by Nucleotide ID:NM_016404Re-query CCDS DB by Protein ID:NP_057488Link to BLAST:NP_057488.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001359000.1 125 Q9UI30-1 125 100% 0 0
NP_001359001.1 125 Q9UI30-1 125 100% 0 0
NP_057488.1 125 Q9UI30-1 125 100% 0 0

Chromosomal Locations for CCDS 8068.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 64316861 64316968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64317058 64317147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64317264 64317365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64317449 64317526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (378 nt):
ATGAAACTGCTTACCCACAATCTGCTGAGCTCGCATGTGCGGGGGGTGGGGTCCCGTGGCTTCCCCCTGC
GCCTCCAGGCCACCGAGGTCCGTATCTGCCCTGTGGAATTCAACCCCAACTTCGTGGCGCGTATGATACC
TAAAGTGGAGTGGTCGGCGTTCCTGGAGGCGGCCGATAACTTGCGTCTGATCCAGGTGCCGAAAGGGCCG
GTTGAGGGATATGAGGAGAATGAGGAGTTTCTGAGGACCATGCACCACCTGCTGCTGGAGGTGGAAGTGA
TAGAGGGCACCCTGCAGTGCCCGGAATCTGGACGTATGTTCCCCATCAGCCGCGGGATCCCCAACATGCT
GCTGAGTGAAGAGGAAACTGAGAGTTGA

Translation (125 aa):
MKLLTHNLLSSHVRGVGSRGFPLRLQATEVRICPVEFNPNFVARMIPKVEWSAFLEAADNLRLIQVPKGP
VEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPISRGIPNMLLSEEETES


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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