NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS48572.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48572.1 Public Mus musculus 10 Tbata 23 108 98 CCDS HistoryNCBI Gene:65971Re-query CCDS DB by CCDS ID:48572.1Re-query CCDS DB by GeneID:65971See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48572.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000122261.7 ENSMUSP00000113902.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122261.7Link to Ensembl Protein Viewer:ENSMUSP00000113902.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122261Re-query CCDS DB by Protein ID:ENSMUSP00000113902
Original member Current member NCBI NM_001017419.2 NP_001017419.1 Accepted alive Link to Nucleotide Sequence:NM_001017419.2Link to Protein Sequence:NP_001017419.1Re-query CCDS DB by Nucleotide ID:NM_001017419Re-query CCDS DB by Protein ID:NP_001017419Link to BLAST:NP_001017419.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001017419.1 359 Q7TSD4-2 359 100% 0 0

Chromosomal Locations for CCDS 48572.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 61174412 61174455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61175731 61175978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61179347 61179505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61180315 61180394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61183300 61183491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61185302 61185383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61186290 61186431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61187677 61187729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61188596 61188675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGACTACAGAGGTGAACCAGCTGTCTGAGCATCCTCTAGTGAGTCCAAAGGCAGAGCCCCAGCCAGAGA
CGAAGCCGGAGAACCTTCCAAGGAGCCACGGGGATGTTGGGCTCCAGAAAGAGACTGTGGTCCCAGGCAT
TGTGGATTTCGAGCTGATCCATGAGGAGCTGAAGACCACAAAGCCCCAAACATCACAACCAACACCCAGT
GCCTACCGCTTTGGACGCCTAAGCCACCATTCCTTCTTCTCGAGGCACCACCCCCAACCACAGCGAGTGA
CTCATATCCAAGATATCGCTGGGAAGCCTGTCTGCGTGGTCAGGGACGAGTTCTCTCTGTCGGCCTTGAC
TCAGCCCACATTCTTATCCCGCTGTCTGATGGGGATGCCCACCATCTCTGTCCCCATTGGGGATCCACAG
TCCAATCGGAACCCCCAGCTTTCTACTTCTGACACCTGGAGGAAGAAACTGAAGGACCTGGCTTCCCGAG
TGACTGTCTTCACTAAGGAAATCCAGCCAAAGCCCGATGAGCAGAAGGAAGAGCCACCTCTGAGGGAACC
TCCTCCGAGAGAGCAGGGGGCCAAATACTCAGCTGAGACCGGTAGGCTTATCCCTGCTTCCAGCCAAGCC
CTCACCCGTCGCAACCGCCAGGGCCAGCGGGTCCACCCTTCTAGCAAAGATGGAGGAGTCCAAGCCTCCA
TTCTGCAGGACCAGGAGCTGCTGATTTTGGAGCTCCTTTGTCAAATTCTACAAACAGATTCTCTAAGGGC
TATTCAGTTCTGGCTGCTTTATGCTCCATCAAAAGAAAAAGATTTAGCTCTGGGGCTTCTGCAAACTGCC
GTGGCTCAGCTTATCCCCCAGCCCCTTTCCTCCATCCCAGCAGAGAAGCTCTGGAACCATCTCCAAGAGC
TTCAAGAGCCTCAAGAGACACAAGAGGCAGCCTACAGTCCATCCCTGAAGAAGACTAGGTCACCACCTCT
ACCCAAAACAGACAAACCAGAGTACATAGGCAAAGCCCAAGTCCTCCTGGTGCATCCCAGCGAGGACCCA
GAGGAGAAAACGACCAAGGCTGAAAGCTGA

Translation (359 aa):
MTTEVNQLSEHPLVSPKAEPQPETKPENLPRSHGDVGLQKETVVPGIVDFELIHEELKTTKPQTSQPTPS
AYRFGRLSHHSFFSRHHPQPQRVTHIQDIAGKPVCVVRDEFSLSALTQPTFLSRCLMGMPTISVPIGDPQ
SNRNPQLSTSDTWRKKLKDLASRVTVFTKEIQPKPDEQKEEPPLREPPPREQGAKYSAETGRLIPASSQA
LTRRNRQGQRVHPSSKDGGVQASILQDQELLILELLCQILQTDSLRAIQFWLLYAPSKEKDLALGLLQTA
VAQLIPQPLSSIPAEKLWNHLQELQEPQETQEAAYSPSLKKTRSPPLPKTDKPEYIGKAQVLLVHPSEDP
EEKTTKAES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH