NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS26331.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26331.1 Public Mus musculus 13 Vmn1r216 23 108 98 CCDS HistoryNCBI Gene:171279Re-query CCDS DB by CCDS ID:26331.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26331.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080253.4 ENSMUSP00000079139.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080253.4Link to Ensembl Protein Viewer:ENSMUSP00000079139.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000080253Re-query CCDS DB by Protein ID:ENSMUSP00000079139
Original member Current member EBI ENSMUST00000228389.1 ENSMUSP00000153724.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228389.1Link to Ensembl Protein Viewer:ENSMUSP00000153724.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228389Re-query CCDS DB by Protein ID:ENSMUSP00000153724
Original member Current member EBI ENSMUST00000228802.1 ENSMUSP00000153991.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228802.1Link to Ensembl Protein Viewer:ENSMUSP00000153991.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228802Re-query CCDS DB by Protein ID:ENSMUSP00000153991
Original member Current member NCBI NM_134245.1 NP_599006.1 Accepted alive Link to Nucleotide Sequence:NM_134245.1Link to Protein Sequence:NP_599006.1Re-query CCDS DB by Nucleotide ID:NM_134245Re-query CCDS DB by Protein ID:NP_599006Link to BLAST:NP_599006.1

Chromosomal Locations for CCDS 26331.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 23099149 23100045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (897 nt):
ATGAAGATAATTTGGAGTGATCTCGTCCAGGGAATAATTTTCATTTCACTTACTGGATTTGGAGTTTTAG
GAAACTTCATATTATTTGTGAGACATGTATATACTTTCATTATGGGTTCTGAGAACAAAAATATAGATGT
AATTTTCATCCACTTGGCTTTTGTAAACACAATCATTATTTACTGTATAGGAGTCAGAAACATAGCCACA
GTTTTTTACATCAGAAACTTCCTAAGTGATGTTGGTTGTAAAACTATAGTTTATCTAGAAAGGGTTGCCC
GTGGCCTCTCCATCTGCACCACCTGTCTCCTCAGCATGGTCCAGGCTGTCACCATCAGTCCCAGGACCAC
ACTGTGGAGAAAACTCAAACAGCATATTCTTGCCTTTCTCTTCCTCTTTTGGATCTTTAATTCCCTCATA
AGTTCCAATTTGCTGCACTATATCACAGCAGGCAGTAGCATGAATAGGTCTGAAATTGGGATGTTTACTG
GATATTGTTATATGCTACCATCCAAGCCCACAGTTAAGTGGCTGTTTCTCTCTTTCATGGCTCTTCGTGA
TGTCATTTTCCAGAGTCTCATGGGATGGAGCAGTGGGTCAATGGTTCTCCATCTATACAAACATCATGTC
CGTGTCCTCTATCTTCACAGCTCCAGGTCTGCAAATAATTCTAGACCAGAAATCAGAGCTACCCAGAGGG
TTCTCACCCTCATGACATGTTTCCTTTTCTTTTATTGGACAGATTTCATTTTCTCCTTATATATAGGTTC
TACAGTGAAAAATGATTTCACAATACCAAATATGAAAGCATTGTTAGTACTTAGCTATGCTGGTCTTAGC
CCCTTTATCCTGATTATCTGGGATGTCCATATTGCTAAGATCTGCAGTGTCTCCTGA

Translation (298 aa):
MKIIWSDLVQGIIFISLTGFGVLGNFILFVRHVYTFIMGSENKNIDVIFIHLAFVNTIIIYCIGVRNIAT
VFYIRNFLSDVGCKTIVYLERVARGLSICTTCLLSMVQAVTISPRTTLWRKLKQHILAFLFLFWIFNSLI
SSNLLHYITAGSSMNRSEIGMFTGYCYMLPSKPTVKWLFLSFMALRDVIFQSLMGWSSGSMVLHLYKHHV
RVLYLHSSRSANNSRPEIRATQRVLTLMTCFLFFYWTDFIFSLYIGSTVKNDFTIPNMKALLVLSYAGLS
PFILIIWDVHIAKICSVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH