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Report for CCDS36593.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36593.1 Public Mus musculus 13 Edaradd 23 108 98 CCDS HistoryNCBI Gene:171211Re-query CCDS DB by CCDS ID:36593.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36593.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000179308.2 ENSMUSP00000136158.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179308.2Link to Ensembl Protein Viewer:ENSMUSP00000136158.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179308Re-query CCDS DB by Protein ID:ENSMUSP00000136158
Original member Current member NCBI NM_133643.4 NP_598398.3 Accepted alive Link to Nucleotide Sequence:NM_133643.4Link to Protein Sequence:NP_598398.3Re-query CCDS DB by Nucleotide ID:NM_133643Re-query CCDS DB by Protein ID:NP_598398Link to BLAST:NP_598398.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598398.3 208 Q8VHX2 208 99.5192% 0 1

Chromosomal Locations for CCDS 36593.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 12478183 12478574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12483600 12483645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12500551 12500609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12507281 12507320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12508368 12508426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12519918 12519948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (627 nt):
ATGGCTTCTCCGGACGACCCTCTGCGCTCAGATCACATGGCAAAGGAGCCAGTGGAGGACACGGACCCCA
GCACTTTATCCTTTGCCATGTCAGACAAGTATCCCATTCAAGACACCGGCCTCCCTAAAGCTAAAGAGTG
TGATACAGTCAATTCCAACTGTCCACCAAATTCTGATGACCAACCTCAGGGAGAAGAAAATGACTTTCCA
GACAGCACCAAAGATCCCCTTTCAGGTGTCAGCAGAAACCAGCCCTGTAAGGACGGGAAGGGCAGCTGCT
CTTGCCCTTCCTGCTCCCCCCGGGCCCCCACCATCAGCGACTTGCTCAACGATCAGGACTTGCTAGATAC
GATCAGGATAAAGCTGGATCCATGTCACCCAACCGTGAAGAACTGGAGGAATTTTGCCAGCAAATGGGGC
ATGCCCTATGATGAACTGTGCTTCCTGGAACAGAGGCCCCAGAGCCCCACGCTGGAGTTCTTATTCCGAA
ACAGCCAGAGGACTGTGGGCCAACTGATGGAGCTCTGCCGGCTGTACCACAGGGCCGATGTGGAGAAGAT
CCTGCGCAGGTGGGTGGATGAGGAGTGGCCCCACCGGGGACACTCCGACAGCTCCATGCACTTCTAG

Translation (208 aa):
MASPDDPLRSDHMAKEPVEDTDPSTLSFAMSDKYPIQDTGLPKAKECDTVNSNCPPNSDDQPQGEENDFP
DSTKDPLSGVSRNQPCKDGKGSCSCPSCSPRAPTISDLLNDQDLLDTIRIKLDPCHPTVKNWRNFASKWG
MPYDELCFLEQRPQSPTLEFLFRNSQRTVGQLMELCRLYHRADVEKILRRWVDEEWPHRGHSDSSMHF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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