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Report for CCDS20193.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20193.1 Public Mus musculus 6 Vmn1r28 23 108 98 CCDS HistoryNCBI Gene:171198Re-query CCDS DB by CCDS ID:20193.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20193.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000228678.1 ENSMUSP00000153785.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228678.1Link to Ensembl Protein Viewer:ENSMUSP00000153785.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228678Re-query CCDS DB by Protein ID:ENSMUSP00000153785
Original member Current member EBI ENSMUST00000226813.1 ENSMUSP00000153799.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226813.1Link to Ensembl Protein Viewer:ENSMUSP00000153799.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226813Re-query CCDS DB by Protein ID:ENSMUSP00000153799
Original member Current member EBI ENSMUST00000227805.1 ENSMUSP00000154482.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227805.1Link to Ensembl Protein Viewer:ENSMUSP00000154482.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227805Re-query CCDS DB by Protein ID:ENSMUSP00000154482
Original member NCBI NM_134180.1 NP_598941.1 Updated not alive Link to Nucleotide Sequence:NM_134180.1Link to Protein Sequence:NP_598941.1Re-query CCDS DB by Nucleotide ID:NM_134180Re-query CCDS DB by Protein ID:NP_598941
Current member NCBI NM_134180.2 NP_598941.1 Accepted alive Link to Nucleotide Sequence:NM_134180.2Link to Protein Sequence:NP_598941.1Re-query CCDS DB by Nucleotide ID:NM_134180Re-query CCDS DB by Protein ID:NP_598941Link to BLAST:NP_598941.1

Chromosomal Locations for CCDS 20193.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 58265174 58266082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (909 nt):
ATGTCCTCTTTAGAGAATGTCTTTTATATCCAAGCTGGACTTGGAGTTCTAGCCAATATGTTTCTCCTTT
TTTTCTATACTTCCATAATACTAGGTGACAGATCTAAGCCCATGGACCTGATCTCCTGTCAACTAACCTT
CATTCACATAATGATGATCCTCAGTGAAGGAGATAACTTGCTTGCAAACATATTAGAGTCACTAAAATTT
GGGAATGACGTCAAATGTAAGACAACTTTTTATATAAACAGGGTGATGAGAGGCCTCTCCATCTGCATCA
CCTGCCTCCTGAGTGTATTCCAGGCTGTCACAATCAGTCCCAGTACCTCCTTGTTGGCAAAATTTAAAAA
TAAAGTAAAAACACACATTATTTCTGCTTTTTTCTATTTTTGGTCTTTCAATTTGTCATTCAGTAGTAGG
CTGATCTTCTATGTTGCTGGTTTTACCAATGTGAGTGAGACCTACCAGATGAAGGTCACTAAATCCTGCT
CACTCTACCCCATGAACTACATCATCAGGGGATCGATTTTAACAGTGATAATCGCCAGGGATGTATTTCT
TGTAGGAGTCATGTTGACCACAAGCACATACATGGTGATTACCTTGTGCAGACATCAAATGCAATGCAAA
CATCTTCATAACATCAGCTACTTAAGAGCATCCCCTGAGAAAAGGGCCACCCAGACCATCTTGCTGTTGG
TAGTGTTCTTTGTGGTCATGTACTGGTTGGACTTCATCATTTCATTCACCTCAACCCTGTCATGGAAGTA
TGTACCCGTTGTACTGACTGTTCAGAAATTGGTGATGTATGCCTATCCCACACTAACTCCTTTAGTTCAA
ATCACTTCTGATAAGAGAATAATCAGTATACTGAAAAACATGCACTCCAAGTTCCACCAGATTTTCTAA

Translation (302 aa):
MSSLENVFYIQAGLGVLANMFLLFFYTSIILGDRSKPMDLISCQLTFIHIMMILSEGDNLLANILESLKF
GNDVKCKTTFYINRVMRGLSICITCLLSVFQAVTISPSTSLLAKFKNKVKTHIISAFFYFWSFNLSFSSR
LIFYVAGFTNVSETYQMKVTKSCSLYPMNYIIRGSILTVIIARDVFLVGVMLTTSTYMVITLCRHQMQCK
HLHNISYLRASPEKRATQTILLLVVFFVVMYWLDFIISFTSTLSWKYVPVVLTVQKLVMYAYPTLTPLVQ
ITSDKRIISILKNMHSKFHQIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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