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Report for CCDS20212.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20212.1 Public Mus musculus 6 Vmn1r33 23 108 98 CCDS HistoryNCBI Gene:171187Re-query CCDS DB by CCDS ID:20212.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20212.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079678.2 ENSMUSP00000078619.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079678.2Link to Ensembl Protein Viewer:ENSMUSP00000078619.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000079678Re-query CCDS DB by Protein ID:ENSMUSP00000078619
Original member Current member EBI ENSMUST00000227418.1 ENSMUSP00000153840.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227418.1Link to Ensembl Protein Viewer:ENSMUSP00000153840.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227418Re-query CCDS DB by Protein ID:ENSMUSP00000153840
Original member Current member NCBI NM_134169.1 NP_598930.1 Accepted alive Link to Nucleotide Sequence:NM_134169.1Link to Protein Sequence:NP_598930.1Re-query CCDS DB by Nucleotide ID:NM_134169Re-query CCDS DB by Protein ID:NP_598930Link to BLAST:NP_598930.1

Chromosomal Locations for CCDS 20212.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 66611651 66612568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGTTTTCATTAAATAATGTCTTTTATGTCCAAGCTGGACTTGGAACCCTAGCCAATATATTTCTTCTTT
TTTTCTACACTATCATAATCCTATGTCACAGATCTAAGCCCATGGACTTGATCTCCTGTCAATTGACCTT
CGTTCACATAATTATGGTCATTACTGGATGGGATATTTTTACTACAGACATGTTTGATTTACTGAACATT
GAAAATGACTTCATATGTAAGGCAACTTCTTACTTAAACAGGGTGATGAGAGGCATCTCTATCTGCATCA
CCTGCCTCCTGAGTGTGTTCCAGGCTGTGACGATCAGTCCCAATACCTCTTTGTTGGCAAAATTTAAATA
TAAATTTAAAAAATACATGATCTCTTCTTTCTTCTATTTTTGGTCTTTCAATTTGTCATTCAGCATTAAC
AGGATCTTCTATACTGGTGCTTATACAAATGTGAGTGAGACCAACCAGTTGAAGGTCACTAAATACTGCT
CACTCTTCCCCATGGACTATATCATCAAGGGATTGATTTCAACAATGACAGCCTTAAGAGATGTATTTCT
TGTAGGAGTCATGCTGACCACAAGTGCATACATGATAATTATCTTGTTCAGACATCAGAGGCAATGCATG
CATCTTCATAGCGACAGCCACTTGAGAGCCTCCCCTGAGAAAAGGGCCACCCACATCATCTTGCTGCTGG
TGTTTTTCTATGTGGTCATGTACTGGATAGACTTCATCATGTCATCCAGAACAGTCCTTTTATGGATGTA
CGACCCAGTCTTGTTGACTGTTCAGAAGTTTGTGATAAATGCCTATCCCACAATTACTCCTTTGATACAA
ATCAGTTCTGATAACCGAATAAACATTATGATAAAAAATATGCAAAAAGTATGCCACCAGATATTTTTTA
AAGTTTAA

Translation (305 aa):
MFSLNNVFYVQAGLGTLANIFLLFFYTIIILCHRSKPMDLISCQLTFVHIIMVITGWDIFTTDMFDLLNI
ENDFICKATSYLNRVMRGISICITCLLSVFQAVTISPNTSLLAKFKYKFKKYMISSFFYFWSFNLSFSIN
RIFYTGAYTNVSETNQLKVTKYCSLFPMDYIIKGLISTMTALRDVFLVGVMLTTSAYMIIILFRHQRQCM
HLHSDSHLRASPEKRATHIILLLVFFYVVMYWIDFIMSSRTVLLWMYDPVLLTVQKFVINAYPTITPLIQ
ISSDNRINIMIKNMQKVCHQIFFKV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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