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Report for CCDS37123.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37123.1 Public Mus musculus 15 Scrt1 23 108 98 CCDS HistoryNCBI Gene:170729Re-query CCDS DB by CCDS ID:37123.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37123.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096365.4 ENSMUSP00000094093.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096365.4Link to Ensembl Protein Viewer:ENSMUSP00000094093.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000096365Re-query CCDS DB by Protein ID:ENSMUSP00000094093
Original member Current member EBI ENSMUST00000164703.1 ENSMUSP00000131152.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164703.1Link to Ensembl Protein Viewer:ENSMUSP00000131152.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164703Re-query CCDS DB by Protein ID:ENSMUSP00000131152
Original member Current member NCBI NM_130893.3 NP_570963.1 Accepted alive Link to Nucleotide Sequence:NM_130893.3Link to Protein Sequence:NP_570963.1Re-query CCDS DB by Nucleotide ID:NM_130893Re-query CCDS DB by Protein ID:NP_570963Link to BLAST:NP_570963.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_570963.1 348 Q99M85 348 100% 0 0

Chromosomal Locations for CCDS 37123.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 76518742 76519673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76521591 76521705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1047 nt):
ATGCCCAGGTCCTTCCTGGTTAAGAAGGTCAAACTTGACACATTCTCTTCGGCAGACCTCGACAGCTCCT
ACGGGCGCGCCCGCAGCGATCTCGGAGTGCGACTGCAAGATAAAGGATACCTCAGTGACTACGTGGGGCC
TGCGTCGGTCTACGATGGCGACGCTGAGGCGGCGTTGCTCAAAGGGCCATCCCCGGAGCCTATGTATGCT
GCGGCTGTGCGGGGAGAGCTGGGTCCCGCGGCCTCTGGCTCAGCACCGCCGCCCACCCCTCGCCCAGAGC
TGGCTACTGCTGCTGGCGGCTACATCAACGGCGACGCGGCGGTCAGCGAAGGCTACGCGGCCGACGCCTT
CTTCATCACTGACGGGCGCTCACGCCGTAAGGCTGCTAATGCCAACGCTGCCGCGGCCCCCTCGACAGCC
TCGGTGGCAGCCCCCGACAGCGACGCTGGAGGTGGGGGCGGGCCGGGCACGCGAGGCTCTGGATCAGGGT
CCGCTAGTCGGGGCGGCACGCGCGTGGGGGCGGGCACCGAGGCGCGTGCGGGGTCGGGAGCCACGGGCGC
TGGTGGCCGGCACGCGTGCGGAGAGTGTGGCAAAACTTACGCCACGTCGTCGAACCTGAGCCGCCACAAG
CAAACGCACCGCAGCTTGGACAGCCAGCTGGCAAGGCGTTGCCCAACGTGTGGCAAGGTGTACGTGTCCA
TGCCGGCCATGGCTATGCACCTGCTCACGCACGATCTGCGCCACAAGTGCGGCGTGTGCGGCAAAGCCTT
CTCCCGGCCCTGGCTGCTGCAGGGCCATATGCGCTCGCACACGGGCGAGAAACCCTTCGGCTGTGCGCAC
TGCGGCAAGGCCTTTGCAGACCGCTCCAACCTGCGCGCGCACATGCAGACGCACTCCGCCTTCAAGCACT
TCCAGTGCAAGCGCTGCAAGAAGAGCTTCGCGCTCAAGTCTTATCTCAACAAGCACTACGAGTCAGCCTG
CTTCAAGGGCGGCGCTAGCGGCCCCGCAACCCCTGCGCCGCCGCAGCTCAGCCCGGTTCAAGCCTAG

Translation (348 aa):
MPRSFLVKKVKLDTFSSADLDSSYGRARSDLGVRLQDKGYLSDYVGPASVYDGDAEAALLKGPSPEPMYA
AAVRGELGPAASGSAPPPTPRPELATAAGGYINGDAAVSEGYAADAFFITDGRSRRKAANANAAAAPSTA
SVAAPDSDAGGGGGPGTRGSGSGSASRGGTRVGAGTEARAGSGATGAGGRHACGECGKTYATSSNLSRHK
QTHRSLDSQLARRCPTCGKVYVSMPAMAMHLLTHDLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPFGCAH
CGKAFADRSNLRAHMQTHSAFKHFQCKRCKKSFALKSYLNKHYESACFKGGASGPATPAPPQLSPVQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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