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Report for CCDS21260.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21260.1 Public Mus musculus 7 Dbp 23 108 98 CCDS HistoryNCBI Gene:13170Re-query CCDS DB by CCDS ID:21260.1Re-query CCDS DB by GeneID:13170See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21260.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080885.11 ENSMUSP00000079693.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080885.11Link to Ensembl Protein Viewer:ENSMUSP00000079693.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000080885Re-query CCDS DB by Protein ID:ENSMUSP00000079693
Original member NCBI NM_016974.3 NP_058670.2 Updated not alive Link to Nucleotide Sequence:NM_016974.3Link to Protein Sequence:NP_058670.2Re-query CCDS DB by Nucleotide ID:NM_016974Re-query CCDS DB by Protein ID:NP_058670
Current member NCBI NM_016974.4 NP_058670.2 Accepted alive Link to Nucleotide Sequence:NM_016974.4Link to Protein Sequence:NP_058670.2Re-query CCDS DB by Nucleotide ID:NM_016974Re-query CCDS DB by Protein ID:NP_058670Link to BLAST:NP_058670.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058670.2 325 Q60925 325 100% 0 0

Chromosomal Locations for CCDS 21260.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 45705624 45705762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45706606 45707016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45708260 45708471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45709665 45709880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGGCGCGGCCTCTGAGCGACAGGACCCCGGGCCCCCTGCTGCTGGGTGGCCCGGCTGGGGCCCCCCCTG
GCGGGGGAGCGCTGCTTGGGCTGAGGAGCCTTCTGCAGGGAAACAGCAAGCCCAAAGAACCGGCCAGCTG
TCTCCTGAAGGAAAAGGAGCGCAAGGCAACTCTGCCCTCAGCCCCCGTCCCGGGACCCGGCCTGGAAACG
GCGGGCCCAGCCGATGCCCCGAGTGGGGCCGTTAGTGGCGGTGGGTCCCCTCGGGGGCGCTCAGGGCCTG
TGGCTGGCCCGAGTCTTTTTGCGCCGCTGCTGTGGGAACGCACTTTGCCTTTCGGGGACGTGGAATACGT
GGACCTGGACGCCTTCTTGCTGGAGCACGGGCTACCGCCGAGCCCGCCGCCCCCCGGGGGCCTGTCGCCG
GCACCCTCTCCAGCGCGCACTCCCGCGCCCTCCCCCGGGCCCGGCTCTTGCAGCTCCTCTTCCCCCCGCT
CCTCGCCCGGGCACGCCCCCGCGCGGGCCACTCTGGGAGCCGCCGGCGGCCACCGCGCAGGCTTGACATC
TAGGGACACACCCAGTCCTGTGGACCCAGACACCGTGGAGGTGCTAATGACCTTTGAACCTGATCCCGCT
GATCTCGCCCTGTCAAGCATTCCAGGCCATGAGACTTTTGACCCTCGGAGACACCGCTTCTCAGAGGAGG
AACTGAAGCCTCAACCAATCATGAAGAAGGCAAGGAAAGTCCAGGTGCCTGAGGAACAGAAGGATGAGAA
GTACTGGAGCCGGAGGTACAAGAACAATGAAGCAGCCAAGAGGTCGAGAGATGCAAGAAGACTCAAGGAG
AACCAGATATCTGTGCGGGCTGCCTTCCTGGAGAAGGAAAACGCCCTGTTGCGGCAGGAGGTGGTGGCTG
TGCGGCAGGAGCTGTCCCACTACCGTGCTGTGCTTTCACGCTACCAGGCCCAGCATGGGACACTGTGA

Translation (325 aa):
MARPLSDRTPGPLLLGGPAGAPPGGGALLGLRSLLQGNSKPKEPASCLLKEKERKATLPSAPVPGPGLET
AGPADAPSGAVSGGGSPRGRSGPVAGPSLFAPLLWERTLPFGDVEYVDLDAFLLEHGLPPSPPPPGGLSP
APSPARTPAPSPGPGSCSSSSPRSSPGHAPARATLGAAGGHRAGLTSRDTPSPVDPDTVEVLMTFEPDPA
DLALSSIPGHETFDPRRHRFSEEELKPQPIMKKARKVQVPEEQKDEKYWSRRYKNNEAAKRSRDARRLKE
NQISVRAAFLEKENALLRQEVVAVRQELSHYRAVLSRYQAQHGTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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