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Report for CCDS31234.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31234.1 Public Homo sapiens 10 LRIT2 24 110 108 CCDS HistoryNCBI Gene:340745Re-query CCDS DB by CCDS ID:31234.1Re-query CCDS DB by GeneID:340745See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31234.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372113.7 ENSP00000361185.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372113.7Link to Ensembl Protein Viewer:ENSP00000361185.3Re-query CCDS DB by Nucleotide ID:ENST00000372113Re-query CCDS DB by Protein ID:ENSP00000361185
Original member Current member NCBI NM_001017924.5 NP_001017924.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001017924.5Link to Protein Sequence:NP_001017924.1Re-query CCDS DB by Nucleotide ID:NM_001017924Re-query CCDS DB by Protein ID:NP_001017924Link to BLAST:NP_001017924.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001017924.1 550 A6NDA9-1 550 100% 0 0

Chromosomal Locations for CCDS 31234.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 84221920 84222680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84224333 84225114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84225411 84225520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1653 nt):
ATGGCTTCAGTTTTTCATTACTTCCTGTTAGTTCTGGTCTTTCTGGATACACACGCAGCTCAGCCTTTCT
GTCTGCCAGGATGCACTTGCTCAGAGGAGAGTTTTGGCAGGACTCTGCAGTGCACATCTGTCTCCTTGGG
AAAGATCCCTGGGAACCTTTCTGAAGAGTTCAAGCAAGTGAGAATTGAAAATTCACCCTTATTTGAGATG
CCCCAAGGGTCTTTCATCAACATGAGCACCTTGGAATACCTCTGGCTCAATTTTAACAATATCAGTGTGA
TCCACCTAGGAGCCCTGGAACACCTGCCAGAACTGAGGGAGCTGAGACTGGAGGGGAACAAGCTCTGCTC
AGTACCATGGACAGCGTTCCGTGCCACCCCTCTCCTGAGGGTCTTGGATCTCAAACGCAACAAGATTGAT
GCACTCCCTGAGCTGGCTCTTCAATTCTTGGTCAGCCTGACCTACCTTGACCTATCCTCCAATAGGCTTA
CAGTTGTATCCAAGAGTGTCTTCCTGAACTGGCCAGCCTACCAGAAATGCCGGCAGCCTGACTGTGGGGC
TGAGATTCTCTCCAGCCTGGTGGTGGCCCTGCATGACAACCCCTGGGTATGTGACTGTCGCCTAAGGGGG
CTTGTCCAGTTTGTCAAGTCCATTACCCTCCCAGTCATCCTGGTGAATTCCTACCTGATATGTCAGGGCC
CTCTGTCCAAGGCAGGGCAGCTTTTTCATGAAACTGAGCTTAGTGCTTGCATGAAGCCACAGATCTCAAC
CCCCAGTGCCAATATCACCATCCGGGCAGGACAGAATGTGACCCTGCGATGCTTGGCACAGGCCAGCCCC
TCACCATCCATTGCATGGACTTATCCCCTGAGTATGTGGAGAGAATTTGATGTGTTGACATCTTCTACTG
GAGAAGACACTGCTCTGTCAGAGCTGGCCATACCTGCTGCCCACCTGGTAGACAGTGGTAATTACACCTG
CATGGCCTCCAACTCCATTGGCAAGAGCAACCTTGTAATCTCTCTCCATGTCCAGCCTGCCCAGGCCCTA
CATGCACCTGATTCTCTTTCCATCCCCTCGGAGGGCAATGCCTACATTGACCTGCGGGTTGTCAAGCAGA
CAGTGCATGGGATTTTGCTGGAGTGGCTTGCAGTGGCTGACACCTCTAAGGAGGAGTGGTTCACCCTCTA
CATTGCATCGGATGAAGCCTTCAGGAAGGAGGTGGTTCACATTGGCCCCGGAATCAATACTTATGCTGTG
GATGACCTCCTTCCTGGCACAAAATATGAGGCCTGCCTCAGCCTAGAGGGCCAGCCTCCACACCAGGGCC
AGTGTGTAGCTTTTGTAACAGGCAGAGATGCTGGTGGGCTAGAGGCACGTGAGCACCTCCTGCATGTCAC
AGTGGTCCTGTGTGTGGTGCTGCTTGCAGTGCCTGTGGGCGCCTATGCCTGGGCAGCCCAGGGCCCCTGC
AGCTGCAGCAAGTGGGTCCTGCGCGGCTGTCTTCATCGCAGGAAAGCCCCCAGCTGCACCCCTGCAGCCC
CGCAGTCCAAGGATGGCTCCTTTAGAGAACATCCAGCTGTCTGTGATGACGGTGAAGGGCACATAGACAC
TGAGGGGGACAAGGAGAAAGGAGGAACGGAAGACAACAGCTGA

Translation (550 aa):
MASVFHYFLLVLVFLDTHAAQPFCLPGCTCSEESFGRTLQCTSVSLGKIPGNLSEEFKQVRIENSPLFEM
PQGSFINMSTLEYLWLNFNNISVIHLGALEHLPELRELRLEGNKLCSVPWTAFRATPLLRVLDLKRNKID
ALPELALQFLVSLTYLDLSSNRLTVVSKSVFLNWPAYQKCRQPDCGAEILSSLVVALHDNPWVCDCRLRG
LVQFVKSITLPVILVNSYLICQGPLSKAGQLFHETELSACMKPQISTPSANITIRAGQNVTLRCLAQASP
SPSIAWTYPLSMWREFDVLTSSTGEDTALSELAIPAAHLVDSGNYTCMASNSIGKSNLVISLHVQPAQAL
HAPDSLSIPSEGNAYIDLRVVKQTVHGILLEWLAVADTSKEEWFTLYIASDEAFRKEVVHIGPGINTYAV
DDLLPGTKYEACLSLEGQPPHQGQCVAFVTGRDAGGLEAREHLLHVTVVLCVVLLAVPVGAYAWAAQGPC
SCSKWVLRGCLHRRKAPSCTPAAPQSKDGSFREHPAVCDDGEGHIDTEGDKEKGGTEDNS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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