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Report for CCDS20919.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20919.1 Public Mus musculus 7 Ceacam20 23 108 98 CCDS HistoryNCBI Gene:71601Re-query CCDS DB by CCDS ID:20919.1Re-query CCDS DB by GeneID:71601See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20919.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094753.5 ENSMUSP00000092344.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094753.5Link to Ensembl Protein Viewer:ENSMUSP00000092344.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000094753Re-query CCDS DB by Protein ID:ENSMUSP00000092344
Original member Current member NCBI NM_027839.2 NP_082115.2 Accepted alive Link to Nucleotide Sequence:NM_027839.2Link to Protein Sequence:NP_082115.2Re-query CCDS DB by Nucleotide ID:NM_027839Re-query CCDS DB by Protein ID:NP_082115Link to BLAST:NP_082115.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082115.2 577 Q9D2Z1 577 100% 0 0

Chromosomal Locations for CCDS 20919.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 19965488 19965539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19967742 19967828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19970165 19970443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19971504 19971785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19974172 19974450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19976032 19976310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19977789 19977906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19978122 19978210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19986010 19986071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19986667 19986708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19988143 19988253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19989973 19990026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1734 nt):
ATGGAGCTTGCTGGCTTCCACTGCTGCTCGTGGACAGTGATCCTTCTCTCAGCCTTACTTCCGACCACAT
GGAGACCCCCAGCTGCTGCCCACTTCATCCACCGTGCCGACCTGCTTAGCAACACCCAGATGGAGAGAGC
TCCACTGGCCAAGCTCACCCTCACAGTCAATCAGAGCACTGTCACAGAGCAGAGGGAAATGGCAGTTTTC
TACTGTAACACTAATGCTGATAACATCACCATCCACTGGGTCTCCAACAACTCTCTGCTTGTGTTGAATG
AGCGCATGAAGCTGTCTGCAGATAACAAGACCCTCACCATCCTCATTGTCCAGCGGGAGGACTCGGGGTC
TTACCTGTGTGAAGTGCAGCATGGCTTTGAGGTTCAGAGAAGTAACACTGCCTCGCTGACGGTGAACTAT
GGTCCTGATCCTGTATCAATCAAGCTGGACTCAGGAGTAGCTGCTGGGGATGTGGTGGAGGTGATGGAAG
GCAACACCGTGAACTTCAGGGTGGAAGCACAGTCCTCCCCTGTCCCTGCCTATGCCTGGTATCTCCCCAG
CGACTTCATCCAGCCCCCTACCACAGGAACATTCACAATCGATGCTGTGTCCAGGGAACATGAGGGCATG
TACAGGTGCCTGGTGTCCAACCCTGTCACCAACTTGTCCCGCCTAGGTGTGGTCAAAGTCCAAGTGCTTG
AAAAAGTGACTGCACCGAATATCGAGTTCCCAACCTTGGCCCTTGTGGAGAATGCCACCTCTGTGACACT
GACCTGCAAAACCAGCCACCAGAGGGTTGGTGTCCATTGGTTTCTAAAGGGTCAGCCACTCAGGCCTAGT
GACCGCCTGACACTGTCATCCCAAAACAGAACCCTGACCATCCATGGCCTTCAGAGAGATGATATTGGGC
CCTATGAGTGTGAGGTGTGGAACTGGGGTAGCCAGGCACGCAGCGTCCCCCTGAAGCTCACCATCAACTA
TGGCCCCGACCAAGTGGAAATCACCCAGGGGCCAGCGTCTGGAGTGGTCAGCACTATTGAGGCAATGCTC
AACTCCAGCTTGACCCTGTATTGCCGGGCAGACTCCATACCAGGTGCCAGGTATCAGTGGACCCATGAGC
ACTCCTCTAAGGTGCTTGATGGGGAGCAGCTGAGCATCGAAGCACTGAGGCAGGAGCATCAGGGCATTTA
CAGCTGTACAAGCTCCAATGATGTCACCGGCCTGGCCCGATCTGCCTCTGTCCTGGTCATGGTGGTAGGT
CTCCAGTCATCCTCTATGTCTCCTGGAGCCATCGCTGGCATCGTTATCGGGATCCTGGTTGCCATTGCTT
TGGCGATAGGTCTGGGCTACTTCCTCTACAGCACAAAGGACAGATGGACTCGCAGGAGATCAGCCAGTGA
TACAACGAGCTCTAATACCATACCACCCACCTCTGTGATGCAGAGCACCCCGGAGTCCAGGCACAACAAA
CCAATGACTGTGTATGACAATACCCCAAAGCCCGAAGGAGAGGCCAGAGGCAAAAAGATGTGGTCACTGC
CACGTGACTCCCCAGAGCAGTTCTATGAGAAGAAACCACCTTCTGCAGCTCCTGAGGGCCCCAGGAAGCC
ATTGCCCCAAATCCCAAAGCAGCCATTGATGCCCCCAGGACCAGGCAGAAATGAAGAGTCAAATTATGAG
AAACTGCTGAATTCAAACCATAGTCTTTACTGCAAGATCACCCCATCAGCCTGA

Translation (577 aa):
MELAGFHCCSWTVILLSALLPTTWRPPAAAHFIHRADLLSNTQMERAPLAKLTLTVNQSTVTEQREMAVF
YCNTNADNITIHWVSNNSLLVLNERMKLSADNKTLTILIVQREDSGSYLCEVQHGFEVQRSNTASLTVNY
GPDPVSIKLDSGVAAGDVVEVMEGNTVNFRVEAQSSPVPAYAWYLPSDFIQPPTTGTFTIDAVSREHEGM
YRCLVSNPVTNLSRLGVVKVQVLEKVTAPNIEFPTLALVENATSVTLTCKTSHQRVGVHWFLKGQPLRPS
DRLTLSSQNRTLTIHGLQRDDIGPYECEVWNWGSQARSVPLKLTINYGPDQVEITQGPASGVVSTIEAML
NSSLTLYCRADSIPGARYQWTHEHSSKVLDGEQLSIEALRQEHQGIYSCTSSNDVTGLARSASVLVMVVG
LQSSSMSPGAIAGIVIGILVAIALAIGLGYFLYSTKDRWTRRRSASDTTSSNTIPPTSVMQSTPESRHNK
PMTVYDNTPKPEGEARGKKMWSLPRDSPEQFYEKKPPSAAPEGPRKPLPQIPKQPLMPPGPGRNEESNYE
KLLNSNHSLYCKITPSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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