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Report for CCDS14139.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14139.1 Public Homo sapiens X HCCS 24 110 108 CCDS HistoryNCBI Gene:3052Re-query CCDS DB by CCDS ID:14139.1Re-query CCDS DB by GeneID:3052See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14139.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000321143.8 ENSP00000326579.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000321143.8Link to Ensembl Protein Viewer:ENSP00000326579.4Re-query CCDS DB by Nucleotide ID:ENST00000321143Re-query CCDS DB by Protein ID:ENSP00000326579
Original member Current member EBI ENST00000380762.5 ENSP00000370139.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380762.5Link to Ensembl Protein Viewer:ENSP00000370139.4Re-query CCDS DB by Nucleotide ID:ENST00000380762Re-query CCDS DB by Protein ID:ENSP00000370139
Original member Current member EBI ENST00000380763.7 ENSP00000370140.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380763.7Link to Ensembl Protein Viewer:ENSP00000370140.3Re-query CCDS DB by Nucleotide ID:ENST00000380763Re-query CCDS DB by Protein ID:ENSP00000370140
Original member Current member NCBI NM_001122608.3 NP_001116080.1 Accepted alive Link to Nucleotide Sequence:NM_001122608.3Link to Protein Sequence:NP_001116080.1Re-query CCDS DB by Nucleotide ID:NM_001122608Re-query CCDS DB by Protein ID:NP_001116080Link to BLAST:NP_001116080.1
Original member Current member NCBI NM_001171991.3 NP_001165462.1 Accepted alive Link to Nucleotide Sequence:NM_001171991.3Link to Protein Sequence:NP_001165462.1Re-query CCDS DB by Nucleotide ID:NM_001171991Re-query CCDS DB by Protein ID:NP_001165462Link to BLAST:NP_001165462.1
Original member Current member NCBI NM_005333.5 NP_005324.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005333.5Link to Protein Sequence:NP_005324.3Re-query CCDS DB by Nucleotide ID:NM_005333Re-query CCDS DB by Protein ID:NP_005324Link to BLAST:NP_005324.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001116080.1 268 P53701 268 100% 0 0
NP_001165462.1 268 P53701 268 100% 0 0
NP_005324.3 268 P53701 268 100% 0 0

Chromosomal Locations for CCDS 14139.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 11112061 11112160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 11114835 11114986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 11117267 11117415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 11118501 11118620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 11120907 11120993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 11121612 11121810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (807 nt):
ATGGGTTTGTCTCCATCTGCTCCTGCTGTTGCAGTTCAGGCCTCAAATGCTTCAGCGTCCCCACCTTCAG
GATGCCCGATGCATGAAGGGAAAATGAAAGGCTGTCCAGTGAATACAGAGCCATCTGGCCCAACCTGTGA
GAAGAAAACATACTCTGTGCCTGCCCACCAGGAACGCGCCTATGAGTACGTGGAGTGTCCCATTAGGGGC
ACTGCGGCTGAGAATAAGGAGAACCTAGATCCTTCAAATCTGATGCCACCACCAAATCAAACACCAGCTC
CAGATCAGCCATTTGCATTGTCTACTGTCAGAGAAGAGTCATCCATTCCGAGAGCAGATTCAGAGAAAAA
GTGGGTTTACCCTTCTGAGCAGATGTTCTGGAATGCAATGTTAAAGAAAGGGTGGAAGTGGAAGGATGAG
GATATCAGTCAGAAGGATATGTATAATATCATTAGAATTCACAATCAGAATAACGAGCAGGCTTGGAAGG
AGATTTTGAAGTGGGAAGCCCTTCATGCTGCAGAGTGTCCTTGTGGTCCATCATTGATCCGGTTTGGAGG
GAAAGCAAAAGAGTATTCACCAAGGGCACGAATTCGTTCCTGGATGGGGTATGAGTTGCCTTTTGATAGG
CACGATTGGATCATAAACCGTTGCGGGACAGAAGTTAGATATGTGATTGATTATTATGATGGTGGTGAAG
TCAACAAGGACTACCAGTTCACCATCCTGGACGTCCGTCCTGCCTTAGATTCACTTTCGGCAGTATGGGA
CAGAATGAAAGTCGCTTGGTGGCGTTGGACCTCGTAA

Translation (268 aa):
MGLSPSAPAVAVQASNASASPPSGCPMHEGKMKGCPVNTEPSGPTCEKKTYSVPAHQERAYEYVECPIRG
TAAENKENLDPSNLMPPPNQTPAPDQPFALSTVREESSIPRADSEKKWVYPSEQMFWNAMLKKGWKWKDE
DISQKDMYNIIRIHNQNNEQAWKEILKWEALHAAECPCGPSLIRFGGKAKEYSPRARIRSWMGYELPFDR
HDWIINRCGTEVRYVIDYYDGGEVNKDYQFTILDVRPALDSLSAVWDRMKVAWWRWTS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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