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Report for CCDS40080.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40080.1 Public Mus musculus 7 Lmo1 23 108 98 CCDS HistoryNCBI Gene:109594Re-query CCDS DB by CCDS ID:40080.1Re-query CCDS DB by GeneID:109594See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40080.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036992.8 ENSMUSP00000037079.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036992.8Link to Ensembl Protein Viewer:ENSMUSP00000037079.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000036992Re-query CCDS DB by Protein ID:ENSMUSP00000037079
Original member NCBI NM_057173.3 NP_476514.1 Updated not alive Link to Nucleotide Sequence:NM_057173.3Link to Protein Sequence:NP_476514.1Re-query CCDS DB by Nucleotide ID:NM_057173Re-query CCDS DB by Protein ID:NP_476514
Current member NCBI NM_057173.4 NP_476514.1 Accepted alive Link to Nucleotide Sequence:NM_057173.4Link to Protein Sequence:NP_476514.1Re-query CCDS DB by Nucleotide ID:NM_057173Re-query CCDS DB by Protein ID:NP_476514Link to BLAST:NP_476514.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_476514.1 156 Q924W9 156 100% 0 0

Chromosomal Locations for CCDS 40080.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 109138871 109138976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109140582 109140707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109143456 109143669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109169983 109170007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (471 nt):
ATGATGGTGCTGGACAAGGAGGACGGTGTGCCGATGCTCTCCGTCCAACCTAAGGGGAAACAGAAGGGCT
GCGCAGGCTGCAACCGCAAGATCAAGGACCGGTACCTGCTGAAGGCACTGGACAAGTACTGGCATGAGGA
CTGCCTCAAGTGTGCCTGCTGTGACTGTCGCCTGGGCGAGGTGGGCTCCACTCTCTACACCAAGGCCAAC
CTCATCCTGTGCCGGCGTGACTACCTGAGGCTTTTTGGCACCACAGGAAACTGTGCTGCCTGCAGCAAGC
TGATCCCAGCTTTTGAGATGGTGATGCGGGCCCGAGACAATGTGTATCACCTTGACTGCTTCGCCTGCCA
GCTCTGCAATCAGAGATTTTGCGTGGGAGACAAATTCTTCCTGAAGAACAACATGATCTTGTGCCAGGTG
GACTATGAGGAGGGGCATCTCAATGGCACCTTTGAATCCCAGGTTCAGTAA

Translation (156 aa):
MMVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKAN
LILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQV
DYEEGHLNGTFESQVQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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