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Report for CCDS52490.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52490.1 Public Mus musculus 8 Semp2l2a 23 108 98 CCDS HistoryNCBI Gene:231201Re-query CCDS DB by CCDS ID:52490.1Re-query CCDS DB by GeneID:231201See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52490.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071308.5 ENSMUSP00000096518.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071308.5Link to Ensembl Protein Viewer:ENSMUSP00000096518.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000071308Re-query CCDS DB by Protein ID:ENSMUSP00000096518
Original member Current member NCBI NM_153093.4 NP_694733.3 Accepted alive Link to Nucleotide Sequence:NM_153093.4Link to Protein Sequence:NP_694733.3Re-query CCDS DB by Nucleotide ID:NM_153093Re-query CCDS DB by Protein ID:NP_694733Link to BLAST:NP_694733.3

Chromosomal Locations for CCDS 52490.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 13836581 13838089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1509 nt):
ATGTGGCAACCTAAACTGCCTGGGTTGGAGATGAAGCCCGAAGCTTCAGCAATAGGGCAAACCCGAAAAT
ACCACGATGAAAGTGGGACAGAGATAGAGTCTGAAGCTTTGGGACAAGAGCCAAAAAGGAAATGCCAGGA
TGGATCAGGGATGGTATTTAAAGAGCCCGGCAAGGCCCAGAAGAAGACTTCTCAGGAGCCTCAAGACCTA
GAGCTCCCGAGAGAACAGCCTAGCAAGGGTCAGGTACGGAAACCCCAGGGAAAGACTCCAAAACAACTAA
AACCCCTAGAGTTGACCGAAGGACCTCCAGAGCAGGCTGTGACTGGGAGGAAGCCTGCTGATGGTGGCAA
GGGTCACAAGCGGCCCTATTCCGTCATGGAAGAAAACGAACAAAGCCCCCAAAAGGAAAAGTACGGAAGG
TTGCTTCAACACCTTCAGTGCGACCAAGATGTGAGGTCAGACCAACACAGGCCTCACCCAATCCTTACAA
ACACCTGGAAGATCAAAGGGGGCGAGTCAGGAGACAGTCATGGATCAGAAAGAATTCAGAGCAATCGAGA
ACCATCTACTGTTGCTGCTCTAAAAGAATGTCTTTCACCAGAGGGGAGAGAGAAGTGCTGTTCTGAGGAG
AAATGTGTTACAGAGAAGAAAGGTTGTGTAAAGGGTGAAGGAAGAAGGGGGAACAGTTTGGAGCCTGATT
TACCGGAAACATGGGCTCAGATCATCCTGGATAGTGGCAGAGGCAATAGCTTACTCCCCAACAAGGTGGC
TGTACTTGCGGCAGAGAAAAAGCCCATTACAGACCAAGGAAAGGGCAGAAAAATGGATCAAATACTTGAT
ATTTCAGAGGACATGGAGAAGGAAATTGAGAATGCGCTGGGTCCAGGACCCCAAGAGGAAATCCTAAGTT
CCAGATTCAAGTTGCAAATCAGCAGAGGAGACATCCAGACGCTGGAGAACGGTCAGTGGCTCAATGATGA
GGTCATCAATTTCTACATGAACCTTCTGGTTGAGAGAAATGAAAACCAAGGCTACCCGGCTCTTCATGTC
TTTAGCACTTTCTTTTACCCCAAGCTAAAGCATAGTGGTTACAGTTCTGTGAAAAGATGGACTCGTGGCA
TCAATCTCTTTGAAAAAGAACTCATCTTGGTGCCTATTCACCAGAGGGTACATTGGAGCCTGGTGGTAAT
CGATTTAAGAAAAAGAAGTATTGTATACCTCGATTCCATGGGACAGACAGGGAAGTCTATCTGTGAGACC
ATCTTCCAATATTTACAAAATGAGAGCAAGACCCGCAGGAACATTGAGCTGGACCCTTTGGAGTGGAAGC
AGTGCAGTGTGACATCAGAGGAGATTCCTCTGCAACTGAATGGGAGTGACTGTGGAGTGTTTACATGTAA
ATATGCAGATTACATCGCTAGGGACCAGCCTGTGACCTTTTCTCAGCAACACATGCCCACCTTCAGGAAG
AGGATGGTCTGGGAAATCCTGCACAGTCAATTACTGTAA

Translation (502 aa):
MWQPKLPGLEMKPEASAIGQTRKYHDESGTEIESEALGQEPKRKCQDGSGMVFKEPGKAQKKTSQEPQDL
ELPREQPSKGQVRKPQGKTPKQLKPLELTEGPPEQAVTGRKPADGGKGHKRPYSVMEENEQSPQKEKYGR
LLQHLQCDQDVRSDQHRPHPILTNTWKIKGGESGDSHGSERIQSNREPSTVAALKECLSPEGREKCCSEE
KCVTEKKGCVKGEGRRGNSLEPDLPETWAQIILDSGRGNSLLPNKVAVLAAEKKPITDQGKGRKMDQILD
ISEDMEKEIENALGPGPQEEILSSRFKLQISRGDIQTLENGQWLNDEVINFYMNLLVERNENQGYPALHV
FSTFFYPKLKHSGYSSVKRWTRGINLFEKELILVPIHQRVHWSLVVIDLRKRSIVYLDSMGQTGKSICET
IFQYLQNESKTRRNIELDPLEWKQCSVTSEEIPLQLNGSDCGVFTCKYADYIARDQPVTFSQQHMPTFRK
RMVWEILHSQLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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