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Report for CCDS52223.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52223.1 Public Mus musculus 7 Iglon5 23 108 98 CCDS HistoryNCBI Gene:210094Re-query CCDS DB by CCDS ID:52223.1Re-query CCDS DB by GeneID:210094See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52223.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107974.2 ENSMUSP00000103608.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107974.2Link to Ensembl Protein Viewer:ENSMUSP00000103608.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107974Re-query CCDS DB by Protein ID:ENSMUSP00000103608
Original member Current member NCBI NM_001164518.2 NP_001157990.1 Accepted alive Link to Nucleotide Sequence:NM_001164518.2Link to Protein Sequence:NP_001157990.1Re-query CCDS DB by Nucleotide ID:NM_001164518Re-query CCDS DB by Protein ID:NP_001157990Link to BLAST:NP_001157990.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157990.1 336 Q8HW98 336 100% 0 0

Chromosomal Locations for CCDS 52223.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 43474463 43474551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43475889 43476043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43476539 43476659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43476832 43476966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43478114 43478233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43479001 43479233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43480581 43480659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43489945 43490023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1011 nt):
ATGCCCCCCCCTGCGCCCGGGGCCCGGCTCCGGCTCCTCGCCGCCGCCGCCCTGGCCGGCCTGGCCGTCA
TCAGCCGAGGGTTGCTGTCCCAGAGCCTGGAGTTCAGCTCACCTGCGGACAACTATACAGTGTGTGAAGG
TGACAACGCCACCCTCAGCTGCTTCATCGATGAGCATGTGACCCGGGTAGCCTGGCTGAACCGCTCCAAC
ATCCTGTATGCGGGCAATGACCGTTGGACCAGTGATCCCCGGGTGCGGCTGCTCATCAACACACCCGAGG
AATTCTCCATCCTCATCACCCAGGTGGGGCTTGGTGATGAGGGCCTCTACACCTGTTCCTTCCAGACCCG
CCACCAGCCCTACACCACTCAGGTCTACCTCATCGTCCATGTCCCTGCCCGTATTGTGAACATCTCCTCA
CCCGTGGCAGTGAATGAAGGGGGCAATGTGAACCTTCTCTGCCTGGCTGTGGGAAGGCCAGAGCCCACTG
TCACCTGGAGACAGCTCCGAGACGGTTTCACCTCAGAGGGTGAGATCCTGGAAATCTCAGACATCCAGCG
GGGCCAGGCCGGGGAATACGAATGCGTTACTCACAACGGAGTGAACTCGGCGCCCGACAGCCGCCGTGTG
CTGGTCACAGTGAATTATCCCCCGACCATCACAGATGTGACAAGCGCGCGCACCGCCCTGGGCCGGGCTG
CCCTCCTGCGCTGTGAAGCTATGGCTGTGCCGCCGGCAGATTTCCAGTGGTACAAGGATGACAGGCTGCT
AAGCAGCGGTTCTGCAGAGGGCCTCAAGGTGCAGACCGAGCGCACCCGCTCTATGCTTCTCTTCGCCAAC
GTGAGCGCCAGGCACTATGGCAACTACACCTGCCGTGCGGCCAACCGGCTCGGAGCGTCCAGCGCCTCCA
TGCGGCTCCTGCGCCCAGGATCCCTGGAGAACTCAGCTCCAAGGCCTCCAGGGCCCCTGACCCTCCTCTC
TGCCCTGAGCTGGCTGTGGTGGAGAATGTAG

Translation (336 aa):
MPPPAPGARLRLLAAAALAGLAVISRGLLSQSLEFSSPADNYTVCEGDNATLSCFIDEHVTRVAWLNRSN
ILYAGNDRWTSDPRVRLLINTPEEFSILITQVGLGDEGLYTCSFQTRHQPYTTQVYLIVHVPARIVNISS
PVAVNEGGNVNLLCLAVGRPEPTVTWRQLRDGFTSEGEILEISDIQRGQAGEYECVTHNGVNSAPDSRRV
LVTVNYPPTITDVTSARTALGRAALLRCEAMAVPPADFQWYKDDRLLSSGSAEGLKVQTERTRSMLLFAN
VSARHYGNYTCRAANRLGASSASMRLLRPGSLENSAPRPPGPLTLLSALSWLWWRM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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