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Report for CCDS2920.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2920.1 Public Homo sapiens 3 HTR1F 24 110 108 CCDS HistoryNCBI Gene:3355Re-query CCDS DB by CCDS ID:2920.1Re-query CCDS DB by GeneID:3355See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2920.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000319595.7 ENSP00000322924.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000319595.7Link to Ensembl Protein Viewer:ENSP00000322924.4Re-query CCDS DB by Nucleotide ID:ENST00000319595Re-query CCDS DB by Protein ID:ENSP00000322924
Original member Current member NCBI NM_000866.5 NP_000857.1 Accepted alive Link to Nucleotide Sequence:NM_000866.5Link to Protein Sequence:NP_000857.1Re-query CCDS DB by Nucleotide ID:NM_000866Re-query CCDS DB by Protein ID:NP_000857Link to BLAST:NP_000857.1
Original member Current member NCBI NM_001322208.2 NP_001309137.1 Accepted alive Link to Nucleotide Sequence:NM_001322208.2Link to Protein Sequence:NP_001309137.1Re-query CCDS DB by Nucleotide ID:NM_001322208Re-query CCDS DB by Protein ID:NP_001309137Link to BLAST:NP_001309137.1
Original member Current member NCBI NM_001322209.2 NP_001309138.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001322209.2Link to Protein Sequence:NP_001309138.1Re-query CCDS DB by Nucleotide ID:NM_001322209Re-query CCDS DB by Protein ID:NP_001309138Link to BLAST:NP_001309138.1
Original member Current member NCBI NM_001322210.2 NP_001309139.1 Accepted alive Link to Nucleotide Sequence:NM_001322210.2Link to Protein Sequence:NP_001309139.1Re-query CCDS DB by Nucleotide ID:NM_001322210Re-query CCDS DB by Protein ID:NP_001309139Link to BLAST:NP_001309139.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000857.1 366 P30939 366 100% 0 0
NP_001309137.1 366 P30939 366 100% 0 0
NP_001309138.1 366 P30939 366 100% 0 0
NP_001309139.1 366 P30939 366 100% 0 0

Chromosomal Locations for CCDS 2920.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 87990750 87991850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1101 nt):
ATGGATTTCTTAAATTCATCTGATCAAAACTTGACCTCAGAGGAACTGTTAAACAGAATGCCATCCAAAA
TTCTGGTGTCCCTCACTCTGTCTGGGCTGGCACTGATGACAACAACTATCAACTCCCTTGTGATCGCTGC
AATTATTGTGACCCGGAAGCTGCACCATCCAGCCAATTATTTAATTTGTTCCCTTGCAGTCACAGATTTT
CTTGTGGCTGTCCTGGTGATGCCCTTCAGCATTGTGTATATTGTGAGAGAGAGCTGGATTATGGGGCAAG
TGGTCTGTGACATTTGGCTGAGTGTTGACATTACCTGCTGCACGTGCTCCATCTTGCATCTCTCAGCTAT
AGCTTTGGATCGGTATCGAGCAATCACAGATGCTGTTGAGTATGCCAGGAAAAGGACTCCAAAGCATGCT
GGCATTATGATTACAATAGTTTGGATTATATCTGTTTTTATCTCTATGCCTCCTCTATTCTGGAGGCACC
AAGGAACTAGCAGAGATGATGAATGCATCATCAAGCACGACCACATTGTTTCCACCATTTACTCAACATT
TGGAGCTTTCTACATCCCACTGGCATTGATTTTGATCCTTTACTACAAAATATATAGAGCAGCAAAGACA
TTATACCACAAGAGACAAGCAAGTAGGATTGCAAAGGAGGAGGTGAATGGCCAAGTCCTTTTGGAGAGTG
GTGAGAAAAGCACTAAATCAGTTTCCACATCCTATGTACTAGAAAAGTCTTTATCTGACCCATCAACAGA
CTTTGATAAAATTCATAGCACAGTGAGAAGTCTCAGGTCTGAATTCAAGCATGAGAAATCTTGGAGAAGG
CAAAAGATCTCAGGTACAAGAGAACGGAAAGCAGCCACTACCCTGGGATTAATCTTGGGTGCATTTGTAA
TATGTTGGCTTCCTTTTTTTGTAAAAGAATTAGTTGTTAATGTCTGTGACAAATGTAAAATTTCTGAAGA
AATGTCCAATTTTTTGGCATGGCTTGGGTATCTCAATTCCCTTATAAATCCACTGATTTACACAATCTTT
AATGAAGACTTCAAGAAAGCATTCCAAAAGCTTGTGCGATGTCGATGTTAG

Translation (366 aa):
MDFLNSSDQNLTSEELLNRMPSKILVSLTLSGLALMTTTINSLVIAAIIVTRKLHHPANYLICSLAVTDF
LVAVLVMPFSIVYIVRESWIMGQVVCDIWLSVDITCCTCSILHLSAIALDRYRAITDAVEYARKRTPKHA
GIMITIVWIISVFISMPPLFWRHQGTSRDDECIIKHDHIVSTIYSTFGAFYIPLALILILYYKIYRAAKT
LYHKRQASRIAKEEVNGQVLLESGEKSTKSVSTSYVLEKSLSDPSTDFDKIHSTVRSLRSEFKHEKSWRR
QKISGTRERKAATTLGLILGAFVICWLPFFVKELVVNVCDKCKISEEMSNFLAWLGYLNSLINPLIYTIF
NEDFKKAFQKLVRCRC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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