NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS47293.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47293.1 Public Homo sapiens 5 PCDHGB7 24 110 108 CCDS HistoryNCBI Gene:56099Re-query CCDS DB by CCDS ID:47293.1Re-query CCDS DB by GeneID:56099See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47293.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398594.4 ENSP00000381594.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000398594.4Link to Ensembl Protein Viewer:ENSP00000381594.3Re-query CCDS DB by Nucleotide ID:ENST00000398594Re-query CCDS DB by Protein ID:ENSP00000381594
Original member Current member NCBI NM_018927.4 NP_061750.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018927.4Link to Protein Sequence:NP_061750.1Re-query CCDS DB by Nucleotide ID:NM_018927Re-query CCDS DB by Protein ID:NP_061750Link to BLAST:NP_061750.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061750.1 929 Q9Y5F8-1 929 100% 0 0

Chromosomal Locations for CCDS 47293.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141417860 141420274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141494807 141494865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141505393 141505481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141510947 141511173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2790 nt):
ATGGGAGGGAGCTGCGCGCAGAGGCGCCGGGCCGGCCCGCGGCAGGTACTATTTCCTTTGCTGCTGCCTT
TGTTCTACCCCACGCTGTGTGAGCCGATCCGCTACTCGATTCCGGAGGAGCTGGCCAAGGGCTCGGTGGT
GGGGAACCTCGCTAAGGATCTAGGGCTTAGTGTCCTGGATGTGTCGGCTCGCGAGCTGCGAGTGAGCGCG
GAGAAGCTGCACTTCAGCGTAGACGCGCAGAGCGGGGACTTACTTGTGAAGGACCGAATAGACCGTGAGC
AAATATGCAAAGAGAGAAGAAGATGTGAGTTGCAATTGGAAGCTGTGGTGGAAAATCCTTTAAATATTTT
TCATGTCATTGTGGTGATTGAGGATGTTAATGACCACGCCCCTCAATTCCGGAAAGATGAAATAAACTTA
GAAATCAGTGAATCCGTCAGCCTGGGGATGGGAACAATTCTTGAGTCTGCAGAAGATCCTGATATTAGTA
TGAATTCGCTGAGCAAATACCAACTAAGTCCTAACGAGTATTTCTCATTGGTGGAGAAAGACAATCCTGA
TGGTGGCAAATATCCAGAATTAGTATTGCAGAAGACTCTGGACCGAGAAACGCAGAGCGCTCACCACTTG
GTACTGACCGCCTTAGATGGTGGGGACCCTCCCCGAAGCGGTACTGCTCAGATAAGAATCCTGGTAATAG
ATGCCAATGACAACCCCCCAGTGTTCAGCCAGGACGTGTACAGGGTTAGCCTTCGGGAAGACGTGCCTCC
AGGCACCTCCATCCTGAGAGTGAAGGCCACTGACCAGGACGAGGGCATCAACTCAGAGATCACTTATTCC
TTCTTTGGTGTGGCTGACAAAGCTCAGCACGTGTTCTCTCTGGATTACACTACAGGAAACATTCTAACTC
AGCAGCCTTTGGATTTTGAAGAAGTAGAAAGATATACGATAAACATAGAAGCAAAAGACCGAGGATCTCT
CTCAACACGGTGTAAAGTAATTGTAGAAGTTGTAGACGAAAACGACAACAGCCCAGAAATAATCATCACG
TCACTCTCTGATCAGATTATGGAGGATTCCCCTCCAGGAGTGGTTGTTGCCCTCTTCAAAACACGGGACC
AAGACTCAGGGGAAAATGGGGAAGTCAGGTGTAGCTTAAGTAGAGGTGTTCCATTTAAGATTCATTCTTC
TTCTAATAATTACTACAAGCTAGTAACAGATGAGGCCCTGGATCGGGAGCAGACCCCAGAGTACAACGTC
ACCATCGCAGCCACAGACAGGGGCAAGCCTCCGTTATCCTCCAGCAAAACCATAACCCTGCACATTACTG
ACGTCAATGACAACGCGCCGGTTTTCGGACAGTCAGCCTACCTGGTCCACGTGCCAGAAAACAACCAGCC
GGGTGCCTCCATAGCGCAAGTCAGTGCCTCTGACCCAGACTTCGGGCTCAACGGCCGTGTCTCCTACTCT
CTCATTGCCAGCGACCTGGAGTCACGAACGCTGTCGTCCTACGTGTCCGTGAGCGCGCAGAGCGGGGTGG
TGTTCGCGCAGCGCGCCTTCGACCACGAGCAGCTGCGCACCTTCGAGCTCACGCTGCAGGCCCGCGACCA
GGGCTCGCCCGCGCTCAGCGCCAATGTGAGCCTGCGCGTGTTGGTGGGCGACCGTAACGACAACGCACCG
CGGGTGCTGTACCCTGCGCTGGGTCCCGACGGCTCCGCGCTCTTCGACACAGTGCCGCGGGCCGCGCAGC
CAGGCTACCTGGTGACCAAGGTGGTGGCCGTGGACGCGGACTCGGGGCACAATGCCTGGCTGTCCTACCA
CGTGGTGCAGGCCAGTGAGCCCGGGCTCTTCAGCCTGGGGCTGCGAACAGGCGAGGTGCGCATGGTGCGT
GCTTTGGGTGACAAGGACTCGGTCCGCCAGCGCCTGCTAGTCGCTGTAAGAGATGGAGGACAGCCACCCC
TTTCAGCCACTGCCACGCTGCACCTGGTGTTCGCAGATAGCTTGCAAGAGGTACTGCCGGATTTCAGCGA
CCATCCCACACCCTCTGACTCCCAGGCTGAGATGCAGTTTTACCTGGTGGTGGCCTTGGCCTTGATTTCT
GTGCTCTTTCTCCTCGCGGTGATTCTAGCTATTGCTCTACGCCTGCGACAGTCTTTCAGCCCTACTGCAG
GAGACTGCTTTGAGTCAGTTCTCTGCTCCAAGTCCGGACCTGTGGGTCCCCCCAACTACAGTGAGGGAAC
GTTGCCCTATGCCTATAATTTTTGTGTGCCTGGGGATCAAATGAATCCAGAATTTAATTTTTTCACATCT
GTTGATCATTGTCCAGCCACACAAGATAACCTCAACAAAGATAGCATGCTACTGGCTAGCATTTTAACTC
CCAGCGTTGAAGCAGATAAGAAGATTCTTAAACAGCAAGCCCCGCCCAACACGGACTGGCGTTTCTCTCA
GGCCCAGAGACCCGGCACCAGCGGCTCCCAAAATGGCGATGACACCGGCACCTGGCCCAACAACCAGTTT
GACACAGAGATGCTGCAAGCCATGATCTTGGCGTCCGCCAGTGAAGCTGCTGATGGGAGCTCCACCCTGG
GAGGGGGTGCCGGCACCATGGGATTGAGCGCCCGCTACGGACCCCAGTTCACCCTGCAGCACGTGCCCGA
CTACCGCCAGAATGTCTACATCCCAGGCAGCAATGCCACACTGACCAACGCAGCTGGCAAGCGGGATGGC
AAGGCCCCAGCAGGTGGCAATGGCAACAAGAAGAAGTCGGGCAAGAAGGAGAAGAAGTAA

Translation (929 aa):
MGGSCAQRRRAGPRQVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARELRVSA
EKLHFSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFRKDEINL
EISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSLVEKDNPDGGKYPELVLQKTLDRETQSAHHL
VLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSEITYS
FFGVADKAQHVFSLDYTTGNILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIIT
SLSDQIMEDSPPGVVVALFKTRDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNV
TIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPDFGLNGRVSYS
LIASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSPALSANVSLRVLVGDRNDNAP
RVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGHNAWLSYHVVQASEPGLFSLGLRTGEVRMVR
ALGDKDSVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDFSDHPTPSDSQAEMQFYLVVALALIS
VLFLLAVILAIALRLRQSFSPTAGDCFESVLCSKSGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNFFTS
VDHCPATQDNLNKDSMLLASILTPSVEADKKILKQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF
DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDG
KAPAGGNGNKKKSGKKEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH