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Report for CCDS12299.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12299.1 Public Homo sapiens 19 BRME1 24 110 108 CCDS HistoryNCBI Gene:79173Re-query CCDS DB by CCDS ID:12299.1Re-query CCDS DB by GeneID:79173See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 12299.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000346736.6 ENSP00000254336.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000346736.6Link to Ensembl Protein Viewer:ENSP00000254336.1Re-query CCDS DB by Nucleotide ID:ENST00000346736Re-query CCDS DB by Protein ID:ENSP00000254336
Original member Current member NCBI NM_001345844.2 NP_001332773.2 Accepted alive Link to Nucleotide Sequence:NM_001345844.2Link to Protein Sequence:NP_001332773.2Re-query CCDS DB by Nucleotide ID:NM_001345844Re-query CCDS DB by Protein ID:NP_001332773Link to BLAST:NP_001332773.2
Original member Current member NCBI NM_024323.5 NP_077299.3 Accepted alive Link to Nucleotide Sequence:NM_024323.5Link to Protein Sequence:NP_077299.3Re-query CCDS DB by Nucleotide ID:NM_024323Re-query CCDS DB by Protein ID:NP_077299Link to BLAST:NP_077299.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001332773.2 637 Q0VDD7-2 637 100% 0 0
NP_077299.3 637 Q0VDD7-2 637 100% 0 0

Chromosomal Locations for CCDS 12299.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 13882802 13882952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13885961 13886055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13889188 13890462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13892786 13892890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13893142 13893223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13895372 13895546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13904862 13904892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1914 nt):
ATGACTAAGAGGAAGAAGCTGCGGACCTCAGGAGAGGGACTCTGTCCTCCAAAACCCCTAAAGAACCCAA
GGCTAGGAGACTTCTATGGGGACCCCCAGAGTTCCATGTTGGGCTGTTTACATCACCCTGAGGAGCCAGA
GGGCAAATTGGGACCTGTTCCCTCTACACAGCAGCACGGGGAGGAACCAGGAAAGGCCGTCTCCAGCTCC
CCTGATGAGGAAACAGGATCTCCCTGCCGGCTCCTCCGTCAACCAGAAAAGGAGCCAGCTCCCCTTCCTC
CTTCCCAGAACTCATTCGGGAGGTTTGTTCCCCAGTTTGCAAAATCCAGGAAGACAGTGACAAGAAAAGA
AGAGATGAAGGATGAGGACCGTGGGAGTGGGGCCTTTAGCCTGGAAACAATCGCAGAGTCCAGCGCCCAG
AGTCCAGGATGCCAGCTGCTAGTGGAGACCCTGGGGGTCCCCCTCCAGGAGGCCACGGAGCTGGGGGACC
CAACGCAGGCAGACAGTGCCCGCCCTGAGCAGAGCAGCCAGAGCCCTGTGCAGGCGGTGCCCGGCAGTGG
GGATTCTCAGCCTGATGACCCTCCAGACAGGGGGACGGGGTTGTCCGCCTCACAGAGGGCCAGCCAAGAC
CACCTGTCAGAACAAGGGGCCGATGACAGCAAGCCTGAGACAGACAGGGTTCCAGGTGACGGTGGCCAAA
AGGAACACCTACCAAGCATTGATTCTGAAGGGGAGAAGCCAGACAGAGGAGCCCCCCAGGAGGGAGGGGC
CCAAAGGACAGCAGGGGCTGGCCTGCCTGGAGGGCCCCAGGAGGAGGGAGACGGTGTCCCCTGTACCCCA
GCATCAGCTCCTACCTCAGGCCCTGCTCCAGGACTGGGCCCTGCCTCTTGGTGCCTGGAACCCGGGTCTG
TGGCCCAGGGCTCCCCTGACCCCCAGCAGACCCCCAGCAGGATGGGTAGGGAAGGGGAAGGGACTCATAG
CAGCCTGGGATGCTCCTCCCTCGGGATGGTTGTCATCGCAGACCTGAGCACAGACCCCACTGAGCTGGAA
GAGAGGGCTCTGGAGGTGGCTGGGCCCGATGGGCAGGCCAGTGCCATATCACCTGCCTCTCCCAGGAGGA
AGGCCGCTGATGGAGGCCACAGGAGGGCCTTGCCAGGCTGCACCTCGCTCACTGGGGAAACCACAGGAGA
AAGTGGGGAGGCAGGGCAGGATGGCAAGCCCCCCGGCGATGTCCTAGTGGGCCCTACAGCCTCCCTGGCT
CTGGCACCTGGGAGCGGAGAGTCCATGATGGGTGCTGGAGATTCCGGTCATGCATCCCCGGACACAGGTC
CATGTGTCAATCAGAAGCAGGAGCCAGGTCCTGCTCAAGAGGAAGCCGAGTTAGGTGGCCAGAACCTCGA
ACGAGACCTCGAGGGGTTCCGTGTGTCCCCGCAAGCCTCTGTTGTGCTGGAACACAGAGAAATAGCAGAC
GACCCTCTCCAGGAGCCCGGGGCTCAGCAGGGCATTCCAGACACCACCTCAGAGCTGGCAGGGCAGCGAG
ACCACCTGCCTCATTCTGCAGACCAGGGCACCTGGGCAGACTCTTTAGCTGTGGAACTCGACTTCCTGCT
GGACAGCCAGATACAGGATGCCCTGGACGCCTCTGACTTCGAAGCCCCACCTGAGCAGCTCTTTCCTTCG
GGGAACAAGCCGGGCCCTTGCTGGCCGGGCCCCAGCTCACATGCCAATGGAGACCCTGTTGCAGTGGCCA
AGGCCCAGCCGAGCCGGCTGATCATGGGCACCCACCGGGACCTGGAAGCTTTCAAGCGCCTTAACTACCG
GAAGACAAAGCTGGGAGGCAAAGCCCCCCTGCCTTACCCTTCCAAGGGGCCTGGGAATATCCCTCGAGGG
GACCCACCCTGGAGGGAGTTGTAG

Translation (637 aa):
MTKRKKLRTSGEGLCPPKPLKNPRLGDFYGDPQSSMLGCLHHPEEPEGKLGPVPSTQQHGEEPGKAVSSS
PDEETGSPCRLLRQPEKEPAPLPPSQNSFGRFVPQFAKSRKTVTRKEEMKDEDRGSGAFSLETIAESSAQ
SPGCQLLVETLGVPLQEATELGDPTQADSARPEQSSQSPVQAVPGSGDSQPDDPPDRGTGLSASQRASQD
HLSEQGADDSKPETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGVPCTP
ASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREGEGTHSSLGCSSLGMVVIADLSTDPTELE
ERALEVAGPDGQASAISPASPRRKAADGGHRRALPGCTSLTGETTGESGEAGQDGKPPGDVLVGPTASLA
LAPGSGESMMGAGDSGHASPDTGPCVNQKQEPGPAQEEAELGGQNLERDLEGFRVSPQASVVLEHREIAD
DPLQEPGAQQGIPDTTSELAGQRDHLPHSADQGTWADSLAVELDFLLDSQIQDALDASDFEAPPEQLFPS
GNKPGPCWPGPSSHANGDPVAVAKAQPSRLIMGTHRDLEAFKRLNYRKTKLGGKAPLPYPSKGPGNIPRG
DPPWREL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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