NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6424.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6424.1 Public Homo sapiens 8 SLC39A4 24 110 108 CCDS HistoryNCBI Gene:55630Re-query CCDS DB by CCDS ID:6424.1Re-query CCDS DB by GeneID:55630See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6424.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000301305.8 ENSP00000301305.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000301305.8Link to Ensembl Protein Viewer:ENSP00000301305.4Re-query CCDS DB by Nucleotide ID:ENST00000301305Re-query CCDS DB by Protein ID:ENSP00000301305
Original member Current member NCBI NM_130849.4 NP_570901.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_130849.4Link to Protein Sequence:NP_570901.3Re-query CCDS DB by Nucleotide ID:NM_130849Re-query CCDS DB by Protein ID:NP_570901Link to BLAST:NP_570901.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_570901.3 647 Q6P5W5-1 647 100% 0 0

Chromosomal Locations for CCDS 6424.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 144412538 144412666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144412759 144412946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144413237 144413389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144413513 144413567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144413750 144413881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144413958 144414095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144414262 144414434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144414725 144414896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144414974 144415110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144415227 144415419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144415810 144416091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144416598 144416789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1944 nt):
ATGGCGTCCCTGGTCTCGCTGGAGCTGGGGCTGCTTCTGGCTGTGCTGGTGGTGACGGCGACGGCGTCCC
CGCCTGCTGGTCTGCTGAGCCTGCTCACCTCTGGCCAGGGCGCTCTGGATCAAGAGGCTCTGGGCGGCCT
GTTAAATACGCTGGCGGACCGTGTGCACTGCGCCAACGGGCCGTGTGGAAAGTGCCTGTCTGTGGAGGAC
GCCCTGGGCCTGGGCGAGCCTGAGGGGTCAGGGCTGCCCCCGGGCCCGGTCCTGGAGGCCAGGTACGTCG
CCCGCCTCAGTGCCGCCGCCGTCCTGTACCTCAGCAACCCCGAGGGCACCTGTGAGGACGCTCGGGCTGG
CCTCTGGGCCTCTCATGCAGACCACCTCCTGGCCCTGCTCGAGAGCCCCAAGGCCCTGACCCCGGGCCTG
AGCTGGCTGCTGCAGAGGATGCAGGCCCGGGCTGCCGGCCAGACCCCCAAGATGGCCTGCGTAGATATCC
CTCAGCTGCTGGAGGAGGCGGTGGGGGCGGGGGCTCCGGGCAGTGCTGGCGGCGTCCTGGCTGCCCTGCT
GGACCATGTCAGGAGCGGGTCTTGCTTCCACGCCTTGCCGAGCCCTCAGTACTTCGTGGACTTTGTGTTC
CAGCAGCACAGCAGCGAGGTCCCTATGACGCTGGCCGAGCTGTCAGCCTTGATGCAGCGCCTGGGGGTGG
GCAGGGAGGCCCACAGTGACCACAGTCATCGGCACAGGGGAGCCAGCAGCCGGGACCCTGTGCCCCTCAT
CAGCTCCAGCAACAGCTCCAGTGTGTGGGACACGGTATGCCTGAGTGCCAGGGACGTGATGGCTGCATAT
GGACTGTCGGAACAGGCTGGGGTGACCCCGGAGGCCTGGGCCCAACTGAGCCCTGCCCTGCTCCAACAGC
AGCTGAGTGGAGCCTGCACCTCCCAGTCCAGGCCCCCCGTCCAGGACCAGCTCAGCCAGTCAGAGAGGTA
TCTGTACGGCTCCCTGGCCACGCTGCTCATCTGCCTCTGCGCGGTCTTTGGCCTCCTGCTGCTGACCTGC
ACTGGCTGCAGGGGGGTCACCCACTACATCCTGCAGACCTTCCTGAGCCTGGCAGTGGGTGCAGTCACTG
GGGACGCTGTCCTGCATCTGACGCCCAAGGTGCTGGGGCTGCATACACACAGCGAAGAGGGCCTCAGCCC
ACAGCCCACCTGGCGCCTCCTGGCTATGCTGGCCGGGCTCTACGCCTTCTTCCTGTTTGAGAACCTCTTC
AATCTCCTGCTGCCCAGGGACCCGGAGGACCTGGAGGACGGGCCCTGCGGCCACAGCAGCCATAGCCACG
GGGGCCACAGCCACGGTGTGTCCCTGCAGCTGGCACCCAGCGAGCTCCGGCAGCCCAAGCCCCCCCACGA
GGGCTCCCGCGCAGACCTGGTGGCGGAGGAGAGCCCGGAGCTGCTGAACCCTGAGCCCAGGAGACTGAGC
CCAGAGTTGAGGCTACTGCCCTATATGATCACTCTGGGCGACGCCGTGCACAACTTCGCCGACGGGCTGG
CCGTGGGCGCCGCCTTCGCGTCCTCCTGGAAGACCGGGCTGGCCACCTCGCTGGCCGTGTTCTGCCACGA
GTTGCCACACGAGCTGGGGGACTTCGCCGCCTTGCTGCACGCGGGGCTGTCCGTGCGCCAAGCACTGCTG
CTGAACCTGGCCTCCGCGCTCACGGCCTTCGCTGGTCTCTACGTGGCACTCGCGGTTGGAGTCAGCGAGG
AGAGCGAGGCCTGGATCCTGGCAGTGGCCACCGGCCTGTTCCTCTACGTAGCACTCTGCGACATGCTCCC
GGCGATGTTGAAAGTACGGGACCCGCGGCCCTGGCTCCTCTTCCTGCTGCACAACGTGGGCCTGCTGGGC
GGCTGGACCGTCCTGCTGCTGCTGTCCCTGTACGAGGATGACATCACCTTCTGA

Translation (647 aa):
MASLVSLELGLLLAVLVVTATASPPAGLLSLLTSGQGALDQEALGGLLNTLADRVHCANGPCGKCLSVED
ALGLGEPEGSGLPPGPVLEARYVARLSAAAVLYLSNPEGTCEDARAGLWASHADHLLALLESPKALTPGL
SWLLQRMQARAAGQTPKMACVDIPQLLEEAVGAGAPGSAGGVLAALLDHVRSGSCFHALPSPQYFVDFVF
QQHSSEVPMTLAELSALMQRLGVGREAHSDHSHRHRGASSRDPVPLISSSNSSSVWDTVCLSARDVMAAY
GLSEQAGVTPEAWAQLSPALLQQQLSGACTSQSRPPVQDQLSQSERYLYGSLATLLICLCAVFGLLLLTC
TGCRGVTHYILQTFLSLAVGAVTGDAVLHLTPKVLGLHTHSEEGLSPQPTWRLLAMLAGLYAFFLFENLF
NLLLPRDPEDLEDGPCGHSSHSHGGHSHGVSLQLAPSELRQPKPPHEGSRADLVAEESPELLNPEPRRLS
PELRLLPYMITLGDAVHNFADGLAVGAAFASSWKTGLATSLAVFCHELPHELGDFAALLHAGLSVRQALL
LNLASALTAFAGLYVALAVGVSEESEAWILAVATGLFLYVALCDMLPAMLKVRDPRPWLLFLLHNVGLLG
GWTVLLLLSLYEDDITF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH