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Report for CCDS58177.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58177.1 Public Homo sapiens 11 ARHGAP20 24 110 108 CCDS HistoryNCBI Gene:57569Re-query CCDS DB by CCDS ID:58177.1Re-query CCDS DB by GeneID:57569See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58177.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000524756.5 ENSP00000432076.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000524756.5Link to Ensembl Protein Viewer:ENSP00000432076.1Re-query CCDS DB by Nucleotide ID:ENST00000524756Re-query CCDS DB by Protein ID:ENSP00000432076
Original member Current member NCBI NM_001258415.2 NP_001245344.1 Accepted alive Link to Nucleotide Sequence:NM_001258415.2Link to Protein Sequence:NP_001245344.1Re-query CCDS DB by Nucleotide ID:NM_001258415Re-query CCDS DB by Protein ID:NP_001245344Link to BLAST:NP_001245344.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001245344.1 1168 Q9P2F6-3 1168 100% 0 0

Chromosomal Locations for CCDS 58177.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 110579370 110581225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110582321 110582435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110583548 110583737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110586216 110586325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110590648 110590809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110591977 110592155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110606561 110606749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110608984 110609050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110611309 110611386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110614561 110614645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110615553 110615594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110624162 110624311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110630628 110630792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110690547 110690629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110711658 110711693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3507 nt):
ATGTCTGCCCGGGAGCGGCAGCCGGCGCTGAAGAAGAAAATGAAAACACTAGCAGAAAGGAGGAGGAGCG
CTCCATCTCTTATCCTGGATAAAGCCCTACAAAAACGGCCTACTACCAGGGACAGTCCTTCTGCTAGTGT
TGACACATGCACATTTCTGTCATCATTAGTGTGCTCCAATAGGACTCTGCTGATTGATGGCCGGGCAGAA
CTCAAAAGAGGCCTCCAGAGGCAGGAGCGGCATCTTTTCCTATTCAATGATCTGTTTGTTGTGGCCAAAA
TCAAATATAACAATAACTTTAAGATAAAAAATAAAATTAAATTAACTGATATGTGGACAGCAAGCTGTGT
GGATGAAGTGGGAGAAGGCAACACCAATGCCATGAAATCCTTTGTTTTGGGCTGGCCCACAGTGAACTTT
GTGGCCACTTTCAGTTCTCCAGAACAAAAGGACAAATGGCTCTCTCTCCTTCAGAGATACATCAATCTAG
AGAAAGAAAAGGACTACCCGAAGAGCATTCCCCTCAAAATCTTCGCCAAGGACATTGGGAATTGTGCCTA
CTCTAAAACTATAACAGTAATGAATTCAGATACAGCGAATGAAGTTATCAACATGTCATTACCAATGCTA
GGGATAACTGGCTCTGAGAGAGATTACCAGTTGTGGGTCAATTCTGGCAAAGAAGAGGCTCCATACCCAC
TCATTGGGCATGAATATCCATATGGAATTAAAATGAGCCATCTTCGAGACTCTGCACTCCTGACACCGGG
ATCAAAGGACTCTACCACCCCTTTCAACCTCCAGGAGCCCTTCCTTATGGAACAGCTCCCCCGAGAGATG
CAGTGCCAGTTCATCCTGAAGCCCAGCCGCCTGGCTGCAGCCCAGCAACTGAGTGATTCAGGTCATAAGA
CATTTAAAAGGAGAAGATCTATCATAAACTGGGCCTTCTGGCGAGGTTCTAGCACTCACCTGGACAACTT
GCCCTCATCGCCAACATCACCTATGCCAGGACAGCTCTTTGGAATTTCTCTGCCAAATATTTGTGAGAAT
GACAATCTGCCCAAACCTGTCTTGGATATGCTTTTCTTTCTTAATCAAAAAGGACCTCTCACCAAAGGTA
TCTTCAGGCAATCAGCCAATGTGAAATCCTGCAGAGAACTAAAAGAGAAATTGAATTCTGGAGTCGAAGT
ACACCTAGACTGTGAATCTATTTTTGTGATAGCATCTGTCTTAAAGGATTTTCTGCGAAATATTCCAGGA
AGTATTTTTTCATCAGATCTCTATGATCACTGGGTCTCTGTAATGGATCAAGGAAATGATGAAGAGAAAA
TAAATACTGTTCAAAGGCTATTAGACCAGCTTCCGAGAGCCAATGTTGTTCTCCTAAGGTATCTTTTTGG
GGTGTTACACAACATTGAGCAACATTCCTCATCCAATCAGATGACTGCATTTAATTTAGCTGTGTGTGTC
GCTCCAAGTATTCTTTGGCCTCCTGCTTCCTCCAGCCCAGAACTAGAAAACGAATTTACAAAAAAGGTTT
CCCTGCTTATACAATTTCTGATTGAGAATTGCCTTAGGATATTTGGAGAAGAAATCACTTCCCTCTTCAG
AGAGGTTTCAGTGAGATGTGACACTAGAGAGAATGCCTCAGATATTTCTTGCTTTCAACTGAATGACTCC
TCCTATGACAGCTTGGAAAATGAGCTAAATGAGGATGTTGATGCACCATGCAGTGACTTGGTAAAGAAAC
TTGGCCAGGGGAGCAGAAGCATGGACTCTGTCTTAACCCTCAGTGACTATGATCTTGACCAGCCCGAGGT
GGAAGGCCTTTTAACCCTAAGCGACTTTGACTTGGCCCATTCTAAAGATGAAGATGTTCAAATGAAACGG
CCTCTTGAATCCAAGCCGGTGAACATTTTAGTGTACACAAAGATCCCACTGCGGGATCATGCCAGGGCCC
CATCTGCCATGTGCACACCCAGCTACCTGTCCACAGCTGCAGCAAATGCTGCAAAAAGCCTGAGGCGACA
CCGGCGTTGCTCAGAGCCCAGCATCGACTATCTGGATTCAAAGCTTTCCTACCTCAGGGAGTTTTATCAG
AAAAAGCTACGCAAGTCCAGCTGTGATGCAATTCTTTCTCAAAAAGATGAAGACTATCTGAAGCAGAATC
AACCCCTCCAGGAGGAAGGAAAGACATGTTTTAAACAGAGTTTAGTCACAGGCACTGATGTCAGCAAGAA
AAATGCCACTACTCAAAACACTAAGAAGAAAAGCTTGTCTGGTAGTGAAGGAAATCACGTGAAACTTTTC
CCTAAGTCTAAGCCAGTGGCCATTTCTGTGGCATCTTATAGTCCTATGTCCTCACAGGATCATTCCAAGA
ACCAGCCCTTTGATGTGAATACATCTGGATACTCCCCACCACACACAGCAGATGCCCTCAAGGGTCCAAG
GACACATCGGCGCTGCTCAGAGCCCAACATAGAAGACCAGAACCGCAAGCTGACCTATCTCAGGGGAATT
TATTCAAAGAAACAACATAAAACCAGCTGTGAAGCTGGTCTCTTGCATGGAGAGGAGGATTATCTCAAAC
GGCATAAGTCTTTGCAAATGGAGGGGCAGAAGCTCATTAATCAGAGTTTAGTCATGGGGATTGAGGTGGG
CAAGAGTAGTGCCACAAACCAAAACACTGAGAAGGTTTTACCCCCAAGATTAAACCTTTGCCCAAGGACC
AGCTATTCCAGCTTATCCTCCCCAGGCACTTCCCCATCCGGCTCATCAGTAAGCTCCCAAGACAGTGCTT
TTTCTCAGATTTCTGAACACTCTGTGTTTACACCCACTGAGACTTCCTCTCCAATAGATTGCACTTTTCA
GGCTCAGAGAAAACGGGAAGACCTTTCTCCTGACTTTAGCAATGCCAGCCATGTTTCCGGAATGCCCGGT
CCCTCATCAGGGCAGGCTTGCAGCCGCCCAGCCTATACAAAGAAGGACACCATGGAGTGGCATTCACAAA
TGCATTCTGTAACTCTTCATCCCAGCACATGGTTGAGAAATGGTGTGGCCAGTTTGAAAAACTGGTCCCT
CAAAAAGAAAGCAAAGGCAGCCAGACCAGAGGAAGAGAAAATAGCTTCTCCAAAAGGACCCTTAGAGCCA
CCCCCACATGCTTCTGGTGTTCCAGAAGCCAACTCACTGCAAGAGGAACAAAAAGACTTGCCCTTAAGGG
CAGCTGAAGGACTGTCCCCTGTGCAGTCAGCCCAAAGGTGTAGTTCTTCTCCCTTCCAGGACTCAGAGAG
ACACTGTAGCTCTCCATTCAGCCTGGTGGAGAGCAGACTTAAGCTGTGCATGAAGTCACATGAGGAAATA
GAGCCTGGTAGTCAGAGCTCTTCTGGTTCTCTGCCTTGGGAAAGAGCCTCAGCCAGCTCTTGGACTCTAG
AGGATGCGACCAGCCCAGACTCAGGGCCTACAGTGGTCTGCGACATTGAGGACAGGTATTTAACCAAAGA
CATTTAA

Translation (1168 aa):
MSARERQPALKKKMKTLAERRRSAPSLILDKALQKRPTTRDSPSASVDTCTFLSSLVCSNRTLLIDGRAE
LKRGLQRQERHLFLFNDLFVVAKIKYNNNFKIKNKIKLTDMWTASCVDEVGEGNTNAMKSFVLGWPTVNF
VATFSSPEQKDKWLSLLQRYINLEKEKDYPKSIPLKIFAKDIGNCAYSKTITVMNSDTANEVINMSLPML
GITGSERDYQLWVNSGKEEAPYPLIGHEYPYGIKMSHLRDSALLTPGSKDSTTPFNLQEPFLMEQLPREM
QCQFILKPSRLAAAQQLSDSGHKTFKRRRSIINWAFWRGSSTHLDNLPSSPTSPMPGQLFGISLPNICEN
DNLPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRELKEKLNSGVEVHLDCESIFVIASVLKDFLRNIPG
SIFSSDLYDHWVSVMDQGNDEEKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCV
APSILWPPASSSPELENEFTKKVSLLIQFLIENCLRIFGEEITSLFREVSVRCDTRENASDISCFQLNDS
SYDSLENELNEDVDAPCSDLVKKLGQGSRSMDSVLTLSDYDLDQPEVEGLLTLSDFDLAHSKDEDVQMKR
PLESKPVNILVYTKIPLRDHARAPSAMCTPSYLSTAAANAAKSLRRHRRCSEPSIDYLDSKLSYLREFYQ
KKLRKSSCDAILSQKDEDYLKQNQPLQEEGKTCFKQSLVTGTDVSKKNATTQNTKKKSLSGSEGNHVKLF
PKSKPVAISVASYSPMSSQDHSKNQPFDVNTSGYSPPHTADALKGPRTHRRCSEPNIEDQNRKLTYLRGI
YSKKQHKTSCEAGLLHGEEDYLKRHKSLQMEGQKLINQSLVMGIEVGKSSATNQNTEKVLPPRLNLCPRT
SYSSLSSPGTSPSGSSVSSQDSAFSQISEHSVFTPTETSSPIDCTFQAQRKREDLSPDFSNASHVSGMPG
PSSGQACSRPAYTKKDTMEWHSQMHSVTLHPSTWLRNGVASLKNWSLKKKAKAARPEEEKIASPKGPLEP
PPHASGVPEANSLQEEQKDLPLRAAEGLSPVQSAQRCSSSPFQDSERHCSSPFSLVESRLKLCMKSHEEI
EPGSQSSSGSLPWERASASSWTLEDATSPDSGPTVVCDIEDRYLTKDI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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