NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS7740.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7740.1 Public Homo sapiens 11 SLC22A18 24 110 108 CCDS HistoryNCBI Gene:5002Re-query CCDS DB by CCDS ID:7740.1Re-query CCDS DB by GeneID:5002See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7740.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000347936.6 ENSP00000307859.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000347936.6Link to Ensembl Protein Viewer:ENSP00000307859.2Re-query CCDS DB by Nucleotide ID:ENST00000347936Re-query CCDS DB by Protein ID:ENSP00000307859
Original member Current member EBI ENST00000380574.5 ENSP00000369948.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380574.5Link to Ensembl Protein Viewer:ENSP00000369948.1Re-query CCDS DB by Nucleotide ID:ENST00000380574Re-query CCDS DB by Protein ID:ENSP00000369948
Original member Current member EBI ENST00000649076.2 ENSP00000497561.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000649076.2Link to Ensembl Protein Viewer:ENSP00000497561.1Re-query CCDS DB by Nucleotide ID:ENST00000649076Re-query CCDS DB by Protein ID:ENSP00000497561
Original member Current member NCBI NM_002555.6 NP_002546.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002555.6Link to Protein Sequence:NP_002546.3Re-query CCDS DB by Nucleotide ID:NM_002555Re-query CCDS DB by Protein ID:NP_002546Link to BLAST:NP_002546.3
Original member Current member NCBI NM_183233.3 NP_899056.2 Accepted alive Link to Nucleotide Sequence:NM_183233.3Link to Protein Sequence:NP_899056.2Re-query CCDS DB by Nucleotide ID:NM_183233Re-query CCDS DB by Protein ID:NP_899056Link to BLAST:NP_899056.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002546.3 424 Q96BI1 424 100% 0 0
NP_899056.2 424 Q96BI1 424 100% 0 0

Chromosomal Locations for CCDS 7740.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 2903346 2903489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2908233 2908330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2909196 2909356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2909578 2909710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2916622 2916740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2917988 2918095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2919307 2919407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2922102 2922203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2922436 2922556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 2925010 2925197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1275 nt):
ATGCAGGGAGCTCGGGCTCCCAGGGACCAGGGCCGGTCCCCCGGCAGGATGAGCGCTCTAGGCCGGTCCT
CGGTCATCTTGCTTACCTACGTGCTGGCCGCCACAGAACTTACCTGCCTCTTCATGCAGTTCTCCATCGT
GCCATACCTGTCTCGGAAACTGGGCCTGGATTCCATTGCCTTCGGCTACCTGCAAACCACCTTCGGGGTG
CTGCAGCTGCTGGGCGGGCCGGTATTTGGCAGGTTCGCAGACCAGCGCGGGGCGCGGGCGGCGCTCACGC
TCTCCTTCCTGGCTGCCTTGGCGCTCTACCTGCTCCTGGCGGCCGCCTCCAGCCCGGCCCTGCCCGGGGT
CTACCTGCTCTTCGCCTCGCGCCTGCCCGGAGCGCTCATGCACACGCTGCCAGCCGCCCAGATGGTCATC
ACGGACCTGTCGGCACCCGAGGAGCGGCCCGCGGCCCTGGGCCGGCTGGGCCTCTGCTTCGGCGTCGGAG
TCATCCTCGGCTCCCTGCTGGGCGGGACCCTGGTCTCCGCGTACGGGATTCAGTGCCCGGCCATCCTGGC
TGCCCTGGCCACCCTCCTGGGAGCTGTCCTCAGCTTCACCTGCATCCCCGCCAGCACCAAAGGGGCCAAA
ACTGACGCCCAGGCTCCACTGCCAGGCGGCCCCCGGGCCAGTGTGTTCGACCTGAAGGCCATCGCCTCCC
TGCTGCGGCTGCCAGACGTCCCGAGGATCTTCCTGGTGAAGGTGGCCTCCAACTGCCCCACAGGGCTCTT
CATGGTCATGTTCTCCATCATCTCCATGGACTTCTTCCAGCTGGAGGCCGCCCAAGCTGGCTACCTCATG
TCCTTCTTCGGGCTCCTCCAGATGGTGACCCAGGGCCTGGTCATCGGGCAGCTGAGCAGCCACTTCTCGG
AGGAGGTGCTGCTCCGGGCCAGCGTGCTGGTCTTCATCGTGGTGGGCCTGGCCATGGCCTGGATGTCCAG
CGTCTTCCACTTCTGCCTCCTGGTGCCCGGCCTGGTGTTCAGCCTCTGCACCCTCAACGTGGTCACCGAC
AGCATGCTGATCAAGGCTGTCTCCACCTCGGACACAGGGACCATGCTGGGCCTCTGCGCCTCTGTACAAC
CACTGCTCCGAACTCTGGGACCCACGGTCGGCGGCCTCCTGTACCGCAGCTTTGGCGTCCCCGTCTTCGG
CCACGTGCAGGTTGCTATCAATACCCTTGTCCTCCTGGTCCTCTGGAGGAAACCTATGCCCCAGAGGAAG
GACAAAGTCCGGTGA

Translation (424 aa):
MQGARAPRDQGRSPGRMSALGRSSVILLTYVLAATELTCLFMQFSIVPYLSRKLGLDSIAFGYLQTTFGV
LQLLGGPVFGRFADQRGARAALTLSFLAALALYLLLAAASSPALPGVYLLFASRLPGALMHTLPAAQMVI
TDLSAPEERPAALGRLGLCFGVGVILGSLLGGTLVSAYGIQCPAILAALATLLGAVLSFTCIPASTKGAK
TDAQAPLPGGPRASVFDLKAIASLLRLPDVPRIFLVKVASNCPTGLFMVMFSIISMDFFQLEAAQAGYLM
SFFGLLQMVTQGLVIGQLSSHFSEEVLLRASVLVFIVVGLAMAWMSSVFHFCLLVPGLVFSLCTLNVVTD
SMLIKAVSTSDTGTMLGLCASVQPLLRTLGPTVGGLLYRSFGVPVFGHVQVAINTLVLLVLWRKPMPQRK
DKVR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH