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Report for CCDS45197.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45197.1 Public Homo sapiens 15 APBA2 24 110 108 CCDS HistoryNCBI Gene:321Re-query CCDS DB by CCDS ID:45197.1Re-query CCDS DB by GeneID:321See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45197.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000411764.5 ENSP00000409312.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000411764.5Link to Ensembl Protein Viewer:ENSP00000409312.1Re-query CCDS DB by Nucleotide ID:ENST00000411764Re-query CCDS DB by Protein ID:ENSP00000409312
Original member Current member EBI ENST00000558330.5 ENSP00000452722.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000558330.5Link to Ensembl Protein Viewer:ENSP00000452722.1Re-query CCDS DB by Nucleotide ID:ENST00000558330Re-query CCDS DB by Protein ID:ENSP00000452722
Original member Current member NCBI NM_001130414.1 NP_001123886.1 Accepted alive Link to Nucleotide Sequence:NM_001130414.1Link to Protein Sequence:NP_001123886.1Re-query CCDS DB by Nucleotide ID:NM_001130414Re-query CCDS DB by Protein ID:NP_001123886Link to BLAST:NP_001123886.1
Original member Current member NCBI NM_001353792.2 NP_001340721.1 Accepted alive Link to Nucleotide Sequence:NM_001353792.2Link to Protein Sequence:NP_001340721.1Re-query CCDS DB by Nucleotide ID:NM_001353792Re-query CCDS DB by Protein ID:NP_001340721Link to BLAST:NP_001340721.1
Original member Current member NCBI NM_001353793.2 NP_001340722.1 Accepted alive Link to Nucleotide Sequence:NM_001353793.2Link to Protein Sequence:NP_001340722.1Re-query CCDS DB by Nucleotide ID:NM_001353793Re-query CCDS DB by Protein ID:NP_001340722Link to BLAST:NP_001340722.1
Original member Current member NCBI NM_001353794.2 NP_001340723.1 Accepted alive Link to Nucleotide Sequence:NM_001353794.2Link to Protein Sequence:NP_001340723.1Re-query CCDS DB by Nucleotide ID:NM_001353794Re-query CCDS DB by Protein ID:NP_001340723Link to BLAST:NP_001340723.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123886.1 737 Q99767-2 737 100% 0 0
NP_001340721.1 737 Q99767-2 737 100% 0 0
NP_001340722.1 737 Q99767-2 737 100% 0 0
NP_001340723.1 737 Q99767-2 737 100% 0 0

Chromosomal Locations for CCDS 45197.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 29053885 29054835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 29074921 29075001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 29076055 29076091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 29093075 29093220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 29098490 29098576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 29101599 29101784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 29105379 29105558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 29106607 29106819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 29108270 29108389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 29113876 29114016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 29117062 29117133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2214 nt):
ATGGCCCACCGGAAGCTTGAGAGCGTGGGGAGCGGCATGTTGGACCATAGGGTGAGACCAGGTCCTGTCC
CTCACAGCCAGGAGCCCGAGAGCGAGGACATGGAGCTGCCCTTGGAGGGCTATGTGCCCGAGGGCCTGGA
GCTGGCTGCCCTGCGGCCAGAGAGCCCCGCGCCAGAGGAACAGGAGTGCCACAACCACAGCCCCGATGGG
GACTCCAGCTCTGACTACGTGAACAACACCTCTGAGGAGGAGGACTATGACGAGGGCCTCCCTGAGGAGG
AGGAGGGCATCACCTACTACATCCGCTACTGCCCTGAGGACGACAGCTACCTAGAGGGCATGGACTGCAA
CGGGGAGGAGTACCTGGCCCACAGTGCACACCCTGTGGACACTGATGAGTGCCAGGAGGCGGTGGAGGAG
TGGACGGACTCGGCGGGCCCGCACCCCCACGGCCACGAGGCTGAAGGCAGCCAGGACTACCCAGACGGCC
AACTGCCCATTCCGGAGGATGAGCCCTCCGTCCTTGAGGCCCATGACCAGGAAGAAGATGGTCACTACTG
TGCCAGCAAAGAGGGCTACCAGGACTACTACCCCGAGGAGGCCAACGGGAACACCGGCGCCTCCCCCTAC
CGCCTGAGGCGTGGGGATGGGGACCTGGAGGACCAGGAGGAGGACATTGACCAGATCGTGGCAGAGATCA
AGATGAGTCTGAGCATGACCAGCATCACCAGCGCCAGTGAGGCCAGCCCCGAGCATGGGCCTGAGCCAGG
GCCTGAGGACTCTGTAGAGGCCTGCCCACCCATCAAGGCCAGCTGCAGCCCCAGCAGGCACGAGGCGAGG
CCCAAGTCGCTGAACCTCCTTCCCGAGGCCAAGCACCCCGGAGACCCCCAGAGAGGCTTCAAGCCCAAGA
CCAGGACCCCAGAAGAGAGGCTGAAGTGGCCCCACGAGCAGGTTTGCAATGGTCTGGAGCAGCCAAGGAA
GCAGCAGCGCTCTGATCTCAATGGACCTGTTGACAATAACAACATTCCAGAGACAAAGAAGGTGGCATCA
TTTCCAAGTTTTGTGGCTGTTCCAGGGCCCTGCGAACCAGAAGACCTCATCGACGGGATCATCTTTGCTG
CCAATTACCTGGGGTCCACCCAGCTGCTATCAGAACGGAACCCTTCCAAAAACATCAGAATGATGCAAGC
GCAGGAGGCCGTCAGCCGGGTCAAGAATTCTGAGGGGGATGCCCAGACGCTGACGGAAGTGGACCTCTTC
ATTTCCACCCAGAGGATCAAGGTTTTAAATGCAGACACGCAGGAAACCATGATGGACCACGCCTTGCGTA
CCATCTCCTACATCGCCGACATTGGGAACATTGTAGTGCTGATGGCCAGACGCCGCATGCCCCGGTCAGC
CTCTCAGGACTGCATCGAGACCACGCCCGGGGCCCAGGAAGGCAAGAAGCAGTATAAGATGATCTGCCAT
GTGTTCGAGTCGGAGGATGCCCAGCTCATCGCCCAGTCTATCGGCCAGGCCTTCAGCGTGGCCTACCAGG
AGTTCCTGCGAGCCAATGGCATCAACCCCGAAGACTTGAGCCAGAAGGAATACAGCGACATCATCAACAC
CCAGGAGATGTACAACGACGACCTCATCCACTTCTCAAACTCGGAGAACTGCAAGGAGCTGCAGCTGGAG
AAGCACAAGGGCGAGATCCTGGGCGTGGTGGTGGTGGAGTCGGGCTGGGGCTCCATCCTGCCCACGGTGA
TCCTGGCCAACATGATGAATGGCGGCCCGGCTGCCCGCTCGGGGAAGCTGAGCATCGGGGACCAGATCAT
GTCCATCAATGGCACCAGCCTGGTGGGGCTGCCCCTCGCCACCTGCCAAGGCATCATCAAGGGCCTGAAG
AACCAGACACAGGTGAAGCTCAACATTGTCAGCTGTCCCCCGGTCACCACGGTCCTTATCAAGCGGCCAG
ACCTCAAGTACCAGCTGGGCTTCAGCGTGCAGAATGGAATTATCTGCAGCCTCATGAGAGGGGGCATTGC
TGAGCGAGGGGGCGTCCGTGTGGGCCACCGCATCATCGAGATCAACGGGCAGAGCGTGGTGGCCACAGCC
CACGAGAAGATAGTCCAAGCTCTGTCCAACTCGGTCGGAGAGATCCACATGAAGACCATGCCCGCCGCCA
TGTTCAGGCTCCTCACGGGTCAGGAGACCCCGCTGTACATCTAG

Translation (737 aa):
MAHRKLESVGSGMLDHRVRPGPVPHSQEPESEDMELPLEGYVPEGLELAALRPESPAPEEQECHNHSPDG
DSSSDYVNNTSEEEDYDEGLPEEEEGITYYIRYCPEDDSYLEGMDCNGEEYLAHSAHPVDTDECQEAVEE
WTDSAGPHPHGHEAEGSQDYPDGQLPIPEDEPSVLEAHDQEEDGHYCASKEGYQDYYPEEANGNTGASPY
RLRRGDGDLEDQEEDIDQIVAEIKMSLSMTSITSASEASPEHGPEPGPEDSVEACPPIKASCSPSRHEAR
PKSLNLLPEAKHPGDPQRGFKPKTRTPEERLKWPHEQVCNGLEQPRKQQRSDLNGPVDNNNIPETKKVAS
FPSFVAVPGPCEPEDLIDGIIFAANYLGSTQLLSERNPSKNIRMMQAQEAVSRVKNSEGDAQTLTEVDLF
ISTQRIKVLNADTQETMMDHALRTISYIADIGNIVVLMARRRMPRSASQDCIETTPGAQEGKKQYKMICH
VFESEDAQLIAQSIGQAFSVAYQEFLRANGINPEDLSQKEYSDIINTQEMYNDDLIHFSNSENCKELQLE
KHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLK
NQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATA
HEKIVQALSNSVGEIHMKTMPAAMFRLLTGQETPLYI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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