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Report for CCDS78047.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78047.1 Public Homo sapiens 5 TRIM36 24 110 108 CCDS HistoryNCBI Gene:55521Re-query CCDS DB by CCDS ID:78047.1Re-query CCDS DB by GeneID:55521See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78047.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000514154.1 ENSP00000424259.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000514154.1Link to Ensembl Protein Viewer:ENSP00000424259.1Re-query CCDS DB by Nucleotide ID:ENST00000514154Re-query CCDS DB by Protein ID:ENSP00000424259
Original member Current member NCBI NM_001300752.2 NP_001287681.1 Accepted alive Link to Nucleotide Sequence:NM_001300752.2Link to Protein Sequence:NP_001287681.1Re-query CCDS DB by Nucleotide ID:NM_001300752Re-query CCDS DB by Protein ID:NP_001287681Link to BLAST:NP_001287681.1

Chromosomal Locations for CCDS 78047.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 115126503 115126857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115130592 115130889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115133860 115134147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115137000 115137124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115137363 115137616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115141279 115141374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115144598 115144744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115147069 115147227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1722 nt):
ATGTGTGACCTTTGTAAACCACCACCTCAAGAATCCACAAAAAGCTGCATGGACTGTAGTGCAAGTTACT
GCAATGAATGCTTCAAAATTCATCACCCTTGGGGTACTATAAAAGCTCAACATGAGTATGTTGGTCCAAC
TACTAACTTCAGACCCAAGATTTTAATGTGCCCAGAACATGAAACAGAGAGAATAAACATGTACTGTGAA
TTATGTAGGAGGCCAGTTTGCCATCTGTGTAAGTTGGGTGGTAATCATGCCAACCACCGTGTAACCACTA
TGAGCAGTGCCTACAAAACCTTAAAGGAAAAGCTTTCAAAGGATATTGATTACCTTATTGGTAAGGAAAG
CCAGGTGAAGAGTCAAATATCTGAACTAAACTTGTTAATGAAAGAAACAGAGTGTAATGGAGAGAGGGCT
AAAGAAGAAGCAATTACACATTTTGAAAAGCTCTTTGAAGTTCTGGAAGAGAGGAAATCATCTGTTTTGA
AAGCAATTGACTCCTCTAAGAAACTAAGATTAGACAAATTTCAGACTCAAATGGAAGAGTACCAGGGACT
TCTAGAGAACAATGGACTTGTGGGATATGCTCAAGAAGTGCTAAAGGAGACAGATCAGTCTTGCTTTGTG
CAGACAGCAAAGCAGCTCCACCTCAGAATACAGAAAGCCACAGAATCTTTGAAGAGCTTTAGACCTGCAG
CTCAGACTTCTTTTGAAGACTATGTTGTTAATACCTCTAAACAAACAGAACTTCTTGGAGAATTATCCTT
TTTCTCTAGTGGCATAGACGTGCCAGAGATCAATGAGGAACAGAGCAAAGTTTATAACAATGCCTTGATA
AATTGGCACCATCCAGAAAAGGATAAAGCTGATAGCTATGTTCTTGAATATCGGAAAATCAATAGAGATG
ATGAAATGTCATGGAATGAGATAGAAGTGTGTGGAACAAGTAAAATAATTCAAGACTTGGAAAACAGTAG
TACCTATGCTTTCAGAGTAAGAGCTTACAAGGGTTCAATCTGTAGTCCTTGCAGCAGAGAATTGATTCTT
CATACTCCTCCAGCTCCAGTTTTCAGCTTCCTCTTTGATGAAAAATGTGGCTATAATAATGAACACCTCC
TGCTGAACTTGAAGAGAGACCGTGTAGAGAGTAGAGCTGGATTTAATCTTCTGCTTGCTGCAGAACGCAT
CCAAGTGGGTTATTACACAAGCTTAGACTACATCATTGGAGATACTGGCATTACAAAAGGAAAACACTTC
TGGGCCTTCCGTGTGGAACCATATTCATACCTGGTAAAAGTGGGAGTTGCTTCTAGCGATAAACTACAAG
AATGGCTCCGTTCTCCCCGGGATGCAGTTAGTCCAAGATATGAGCAAGACAGTGGGCATGACAGTGGAAG
TGAGGATGCCTGTTTTGATTCTTCACAACCATTTACCTTAGTTACTATAGGCATGCAGAAATTTTTTATA
CCCAAGTCACCTACTTCTTCTAATGAACCTGAAAATAGAGTTCTCCCTATGCCAACAAGTATTGGGATTT
TCCTTGACTGTGATAAAGGCAAAGTAGATTTCTATGATATGGATCAGATGAAATGCCTTTATGAACGCCA
AGTGGACTGTTCACATACACTGTATCCAGCATTTGCATTAATGGGCAGTGGAGGAATTCAGCTTGAAGAA
CCCATCACAGCAAAATATCTGGAATACCAAGAGGACATGTAG

Translation (573 aa):
MCDLCKPPPQESTKSCMDCSASYCNECFKIHHPWGTIKAQHEYVGPTTNFRPKILMCPEHETERINMYCE
LCRRPVCHLCKLGGNHANHRVTTMSSAYKTLKEKLSKDIDYLIGKESQVKSQISELNLLMKETECNGERA
KEEAITHFEKLFEVLEERKSSVLKAIDSSKKLRLDKFQTQMEEYQGLLENNGLVGYAQEVLKETDQSCFV
QTAKQLHLRIQKATESLKSFRPAAQTSFEDYVVNTSKQTELLGELSFFSSGIDVPEINEEQSKVYNNALI
NWHHPEKDKADSYVLEYRKINRDDEMSWNEIEVCGTSKIIQDLENSSTYAFRVRAYKGSICSPCSRELIL
HTPPAPVFSFLFDEKCGYNNEHLLLNLKRDRVESRAGFNLLLAAERIQVGYYTSLDYIIGDTGITKGKHF
WAFRVEPYSYLVKVGVASSDKLQEWLRSPRDAVSPRYEQDSGHDSGSEDACFDSSQPFTLVTIGMQKFFI
PKSPTSSNEPENRVLPMPTSIGIFLDCDKGKVDFYDMDQMKCLYERQVDCSHTLYPAFALMGSGGIQLEE
PITAKYLEYQEDM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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