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Report for CCDS46821.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46821.1 Public Homo sapiens 3 MAP4 24 110 108 CCDS HistoryNCBI Gene:4134Re-query CCDS DB by CCDS ID:46821.1Re-query CCDS DB by GeneID:4134See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46821.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000439356.2 ENSP00000397414.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000439356.2Link to Ensembl Protein Viewer:ENSP00000397414.1Re-query CCDS DB by Nucleotide ID:ENST00000439356Re-query CCDS DB by Protein ID:ENSP00000397414
Original member Current member EBI ENST00000434267.5 ENSP00000402767.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000434267.5Link to Ensembl Protein Viewer:ENSP00000402767.1Re-query CCDS DB by Nucleotide ID:ENST00000434267Re-query CCDS DB by Protein ID:ENSP00000402767
Original member Current member NCBI NM_030885.4 NP_112147.2 Accepted alive Link to Nucleotide Sequence:NM_030885.4Link to Protein Sequence:NP_112147.2Re-query CCDS DB by Nucleotide ID:NM_030885Re-query CCDS DB by Protein ID:NP_112147Link to BLAST:NP_112147.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112147.2 99 P27816-7 99 100% 0 0

Chromosomal Locations for CCDS 46821.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 47975458 47975465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 47977865 47977933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 47998638 47998860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (300 nt):
ATGGCTGACCTCAGTCTTGCAGATGCATTAACAGAACCATCTCCAGACATTGAGGGAGAGATAAAGCGGG
ACTTCATTGCCACACTAGAGGCAGAGGCCTTTGATGATGTTGTGGGAGAAACTGTTGGAAAAACAGACTA
TATTCCTCTCCTGGATGTTGATGAGAAAACCGGGAACTCAGAGTCAAAGAAGAAACCGTGCTCAGAAACT
AGCCAGATTGAAGATACTCCATCTTCTAAACCAACACTCCTAGCCAATGGTGGTCATGGAGTAGAAGGGA
GCGATACTACAGAAGCCTAG

Translation (99 aa):
MADLSLADALTEPSPDIEGEIKRDFIATLEAEAFDDVVGETVGKTDYIPLLDVDEKTGNSESKKKPCSET
SQIEDTPSSKPTLLANGGHGVEGSDTTEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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