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Report for CCDS8044.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8044.1 Public Homo sapiens 11 PLAAT5 24 110 108 CCDS HistoryNCBI Gene:117245Re-query CCDS DB by CCDS ID:8044.1Re-query CCDS DB by GeneID:117245See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8044.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000301790.4 ENSP00000301790.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000301790.4Link to Ensembl Protein Viewer:ENSP00000301790.4Re-query CCDS DB by Nucleotide ID:ENST00000301790Re-query CCDS DB by Protein ID:ENSP00000301790
Original member Current member NCBI NM_054108.4 NP_473449.2 Accepted alive Link to Nucleotide Sequence:NM_054108.4Link to Protein Sequence:NP_473449.2Re-query CCDS DB by Nucleotide ID:NM_054108Re-query CCDS DB by Protein ID:NP_473449Link to BLAST:NP_473449.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_473449.2 279 Q96KN8-1 279 100% 0 0

Chromosomal Locations for CCDS 8044.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 63463503 63463595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63466110 63466372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63468357 63468465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63488871 63488976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63490243 63490363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63490887 63491034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (840 nt):
ATGGGCCTGAGCCCGGGCGCCGAGGGGGAGTACGCGCTCCGCCTCCCTAGGATTCCCCCACCCCTCCCCA
AACCCGCCTCGCGAACCGCCAGTACCGGGCCCAAGGACCAGCCGCCTGCGCTCAGACGTTCAGCTGTGCC
CCACTCAGGTCTAAATAGCATTTCCCCCCTTGAATTAGAAGAATCCGTGGGATTCGCAGCGTTGGTCCAG
CTCCCAGCCAAGCAGCCTCCGCCGGGCACATTAGAACAGGGCAGAAGCATCCAGCAAGGGGAGAAGGCTG
TAGTTAGCTTGGAGACCACACCCAGCCAGAAAGCAGACTGGAGTTCAATTCCAAAGCCTGAGAATGAAGG
CAAGTTAATAAAGCAAGCAGCTGAGGGAAAACCAAGACCCAGACCTGGAGACCTGATTGAGATTTTTCGA
ATTGGCTATGAGCACTGGGCCATCTATGTAGAAGATGATTGCGTGGTCCATCTGGCTCCCCCAAGTGAGG
AGTTTGAGGTGGGCAGCATTACTTCCATCTTTAGCAATCGGGCCGTGGTGAAATACAGTCGTCTGGAGGA
TGTGCTGCATGGCTGCTCCTGGAAGGTCAATAACAAGCTAGATGGGACGTACCTGCCCTTGCCGGTGGAC
AAGATCATCCAGCGTACAAAAAAGATGGTCAACAAGATCGTGCAGTACAGCCTGATTGAAGGGAACTGTG
AGCACTTTGTCAATGGCCTCAGATATGGCGTACCCCGGAGCCAGCAGGTAGAGCACGCCCTGATGGAAGG
AGCGAAGGCTGCTGGAGCAGTTATTTCAGCTGTAGTGGATAGCATAAAGCCCAAACCAATAACTGCCTGA

Translation (279 aa):
MGLSPGAEGEYALRLPRIPPPLPKPASRTASTGPKDQPPALRRSAVPHSGLNSISPLELEESVGFAALVQ
LPAKQPPPGTLEQGRSIQQGEKAVVSLETTPSQKADWSSIPKPENEGKLIKQAAEGKPRPRPGDLIEIFR
IGYEHWAIYVEDDCVVHLAPPSEEFEVGSITSIFSNRAVVKYSRLEDVLHGCSWKVNNKLDGTYLPLPVD
KIIQRTKKMVNKIVQYSLIEGNCEHFVNGLRYGVPRSQQVEHALMEGAKAAGAVISAVVDSIKPKPITA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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