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Report for CCDS3308.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3308.2 Public Homo sapiens 3 TMEM44 24 110 108 CCDS HistoryNCBI Gene:93109Re-query CCDS DB by CCDS ID:3308.2Re-query CCDS DB by GeneID:93109See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 3308.1
The coding region has been updated to represent an alternative splice site that is more supported by the available transcript data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 3308.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000473092.5 ENSP00000418674.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000473092.5Link to Ensembl Protein Viewer:ENSP00000418674.1Re-query CCDS DB by Nucleotide ID:ENST00000473092Re-query CCDS DB by Protein ID:ENSP00000418674
Original member Current member NCBI NM_138399.5 NP_612408.3 Accepted alive Link to Nucleotide Sequence:NM_138399.5Link to Protein Sequence:NP_612408.3Re-query CCDS DB by Nucleotide ID:NM_138399Re-query CCDS DB by Protein ID:NP_612408Link to BLAST:NP_612408.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_612408.3 438 Q2T9K0-7 438 100% 0 0

Chromosomal Locations for CCDS 3308.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 194588529 194588639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194593041 194593070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194604287 194604445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194610916 194611020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194615569 194615697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194617099 194617269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194623224 194623310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194623529 194623695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194625897 194625990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194628383 194628509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 194633079 194633215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1317 nt):
ATGGGGGAGGCGCCCAGCCCCGCGCCCGCGCTCTGGGACTGGGACTACCTGGACCGCTGCTTCGCCCGCC
ACCGCGTCTGCATCTCCTTCGGCCTGTGGATCTGCGCCTCCTCCTGCTGGATCGCCGCCCACGCGCTGCT
TCTCTATCTGAGATGTGCACAGAAACCCAGACAGGACCAGTCGGCACTGTGTGCTGCGTGCTGCCTCCTG
ACCAGTCTGTGTGACACCGTCGGGGCTCTTCTGGCCAGACAGCTCACAATCCAGGTTTTCACTGGTGCCT
ACCTAGCAGCTATTGACTTAGTGAACTTTATGTTCATTCTCTTCCCAGTCTGTGGATCCAAATTCAAGTC
TAATTCAGATCGGGAAGCCCGAGAGAGGAAGAGGAGGCGGCAGCTCAGGGCCAGTGTGTTTGCCCTGGCC
CTGCCGCTGAGCCTGGGCCCGTGCTGGGCTCTGTGGGTTGCTGTCCCGAAGGCTTCAGCCACCATCCGGG
GGCCACAGCGGAGGCTGCTAGCGAGCCTGCTGCAGGAAAATACTGAGATCCTCGGCTACCTGCTGGGTAG
CGTTGCTGCCTTTGGCTCCTGGGCTTCTCGGATCCCCCCTCTCTCCAGAATTTGCCGGGGGAAGACATTT
CCCTCCATCCACCTGTGGACCCGGCTCCTGTCGGCCCTGGCTGGCCTCCTCTATGCCTCGGCCATTGTGG
CCCACGACCAGCACCCTGAGTACCTGCTGCGGGCCACACCCTGGTTCCTGACCTCCCTCGGCCGTGCGGC
ACTGGACCTCGCTATTATTTTCCTTTCGTGTGTGATGAAGAGCAAGATGAGACAGGCCTTAGGATTTGCC
AAGGAAGCCAGAGAGAGCCCTGACACCCAAGCCCTTTTGACCTGTGCAGAGAAAGAGGAAGAAAACCAGG
AGAATTTGGATTGGGTGCCTCTCACCACACTGTCACACTGCAAGTCACTGAGGACAATGACAGCAATCAG
TCGCTACATGGAGCTGACCATCGAGCCTGTGCAGCAGGCAGGCTGCAGTGCCACCAGGCTGCCAGGTGAC
GGGCAGACGAGCGCCGGAGATGCGTCCCTGCAGGACCCCCCGTCGTACCCTCCCGTTCAGGTCATCCGGG
CCCGGGTGTCTTCCGGCAGCTCCTCTGAGGTCTCCTCCATCAACTCCGACCTGGAGAAGTATTGGGAGGC
CCTAAACTCGGAGCAGTGGGACCCTGAAGATGTGAACCTCGAAGGCAGCAAAGAAAATGTGGAGCTACTG
GGATCCCAGGTGCACCAGGACTCTGTGAGGACAGCACACCTGAGTGATGATGATTAA

Translation (438 aa):
MGEAPSPAPALWDWDYLDRCFARHRVCISFGLWICASSCWIAAHALLLYLRCAQKPRQDQSALCAACCLL
TSLCDTVGALLARQLTIQVFTGAYLAAIDLVNFMFILFPVCGSKFKSNSDREARERKRRRQLRASVFALA
LPLSLGPCWALWVAVPKASATIRGPQRRLLASLLQENTEILGYLLGSVAAFGSWASRIPPLSRICRGKTF
PSIHLWTRLLSALAGLLYASAIVAHDQHPEYLLRATPWFLTSLGRAALDLAIIFLSCVMKSKMRQALGFA
KEARESPDTQALLTCAEKEEENQENLDWVPLTTLSHCKSLRTMTAISRYMELTIEPVQQAGCSATRLPGD
GQTSAGDASLQDPPSYPPVQVIRARVSSGSSSEVSSINSDLEKYWEALNSEQWDPEDVNLEGSKENVELL
GSQVHQDSVRTAHLSDDD


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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