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Report for CCDS8757.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8757.1 Public Homo sapiens 12 VDR 24 110 108 CCDS HistoryNCBI Gene:7421Re-query CCDS DB by CCDS ID:8757.1Re-query CCDS DB by GeneID:7421See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8757.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395324.6 ENSP00000378734.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395324.6Link to Ensembl Protein Viewer:ENSP00000378734.2Re-query CCDS DB by Nucleotide ID:ENST00000395324Re-query CCDS DB by Protein ID:ENSP00000378734
Original member Current member EBI ENST00000549336.6 ENSP00000449573.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000549336.6Link to Ensembl Protein Viewer:ENSP00000449573.2Re-query CCDS DB by Nucleotide ID:ENST00000549336Re-query CCDS DB by Protein ID:ENSP00000449573
Original member Current member NCBI NM_000376.3 NP_000367.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000376.3Link to Protein Sequence:NP_000367.1Re-query CCDS DB by Nucleotide ID:NM_000376Re-query CCDS DB by Protein ID:NP_000367Link to BLAST:NP_000367.1
Original member Current member NCBI NM_001017535.2 NP_001017535.1 Accepted alive Link to Nucleotide Sequence:NM_001017535.2Link to Protein Sequence:NP_001017535.1Re-query CCDS DB by Nucleotide ID:NM_001017535Re-query CCDS DB by Protein ID:NP_001017535Link to BLAST:NP_001017535.1
Original member Current member NCBI NM_001374661.1 NP_001361590.1 Accepted alive Link to Nucleotide Sequence:NM_001374661.1Link to Protein Sequence:NP_001361590.1Re-query CCDS DB by Nucleotide ID:NM_001374661Re-query CCDS DB by Protein ID:NP_001361590Link to BLAST:NP_001361590.1
Original member Current member NCBI NM_001374662.1 NP_001361591.1 Accepted alive Link to Nucleotide Sequence:NM_001374662.1Link to Protein Sequence:NP_001361591.1Re-query CCDS DB by Nucleotide ID:NM_001374662Re-query CCDS DB by Protein ID:NP_001361591Link to BLAST:NP_001361591.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000367.1 427 P11473-1 427 100% 0 0
NP_001017535.1 427 P11473-1 427 100% 0 0
NP_001361590.1 427 P11473-1 427 100% 0 0
NP_001361591.1 427 P11473-1 427 100% 0 0

Chromosomal Locations for CCDS 8757.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 47844746 47845005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47846335 47846451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47846657 47846808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47855630 47855801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47857129 47857249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47857504 47857688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47865047 47865177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 47878968 47879113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1284 nt):
ATGGAGGCAATGGCGGCCAGCACTTCCCTGCCTGACCCTGGAGACTTTGACCGGAACGTGCCCCGGATCT
GTGGGGTGTGTGGAGACCGAGCCACTGGCTTTCACTTCAATGCTATGACCTGTGAAGGCTGCAAAGGCTT
CTTCAGGCGAAGCATGAAGCGGAAGGCACTATTCACCTGCCCCTTCAACGGGGACTGCCGCATCACCAAG
GACAACCGACGCCACTGCCAGGCCTGCCGGCTCAAACGCTGTGTGGACATCGGCATGATGAAGGAGTTCA
TTCTGACAGATGAGGAAGTGCAGAGGAAGCGGGAGATGATCCTGAAGCGGAAGGAGGAGGAGGCCTTGAA
GGACAGTCTGCGGCCCAAGCTGTCTGAGGAGCAGCAGCGCATCATTGCCATACTGCTGGACGCCCACCAT
AAGACCTACGACCCCACCTACTCCGACTTCTGCCAGTTCCGGCCTCCAGTTCGTGTGAATGATGGTGGAG
GGAGCCATCCTTCCAGGCCCAACTCCAGACACACTCCCAGCTTCTCTGGGGACTCCTCCTCCTCCTGCTC
AGATCACTGTATCACCTCTTCAGACATGATGGACTCGTCCAGCTTCTCCAATCTGGATCTGAGTGAAGAA
GATTCAGATGACCCTTCTGTGACCCTAGAGCTGTCCCAGCTCTCCATGCTGCCCCACCTGGCTGACCTGG
TCAGTTACAGCATCCAAAAGGTCATTGGCTTTGCTAAGATGATACCAGGATTCAGAGACCTCACCTCTGA
GGACCAGATCGTACTGCTGAAGTCAAGTGCCATTGAGGTCATCATGTTGCGCTCCAATGAGTCCTTCACC
ATGGACGACATGTCCTGGACCTGTGGCAACCAAGACTACAAGTACCGCGTCAGTGACGTGACCAAAGCCG
GACACAGCCTGGAGCTGATTGAGCCCCTCATCAAGTTCCAGGTGGGACTGAAGAAGCTGAACTTGCATGA
GGAGGAGCATGTCCTGCTCATGGCCATCTGCATCGTCTCCCCAGATCGTCCTGGGGTGCAGGACGCCGCG
CTGATTGAGGCCATCCAGGACCGCCTGTCCAACACACTGCAGACGTACATCCGCTGCCGCCACCCGCCCC
CGGGCAGCCACCTGCTCTATGCCAAGATGATCCAGAAGCTAGCCGACCTGCGCAGCCTCAATGAGGAGCA
CTCCAAGCAGTACCGCTGCCTCTCCTTCCAGCCTGAGTGCAGCATGAAGCTAACGCCCCTTGTGCTCGAA
GTGTTTGGCAATGAGATCTCCTGA

Translation (427 aa):
MEAMAASTSLPDPGDFDRNVPRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGDCRITK
DNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKREMILKRKEEEALKDSLRPKLSEEQQRIIAILLDAHH
KTYDPTYSDFCQFRPPVRVNDGGGSHPSRPNSRHTPSFSGDSSSSCSDHCITSSDMMDSSSFSNLDLSEE
DSDDPSVTLELSQLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFT
MDDMSWTCGNQDYKYRVSDVTKAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAA
LIEAIQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQYRCLSFQPECSMKLTPLVLE
VFGNEIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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