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Report for CCDS10971.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10971.1 Public Homo sapiens 16 TRAPPC2L 24 110 108 CCDS HistoryNCBI Gene:51693Re-query CCDS DB by CCDS ID:10971.1Re-query CCDS DB by GeneID:51693See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10971.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000301021.7 ENSP00000301021.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000301021.7Link to Ensembl Protein Viewer:ENSP00000301021.3Re-query CCDS DB by Nucleotide ID:ENST00000301021Re-query CCDS DB by Protein ID:ENSP00000301021
Original member Current member NCBI NM_016209.5 NP_057293.1 Accepted alive Link to Nucleotide Sequence:NM_016209.5Link to Protein Sequence:NP_057293.1Re-query CCDS DB by Nucleotide ID:NM_016209Re-query CCDS DB by Protein ID:NP_057293Link to BLAST:NP_057293.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057293.1 140 Q9UL33-1 140 100% 0 0

Chromosomal Locations for CCDS 10971.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 88857151 88857183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88858619 88858791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88859663 88859750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88859893 88859972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88860911 88860959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (423 nt):
ATGGCGGTGTGCATCGCGGTGATTGCCAAGGAGAATTACCCCCTCTACATTCGCAGCACCCCTACGGAGA
ACGAGCTGAAGTTCCACTACATGGTGCACACATCTCTGGACGTGGTGGATGAGAAGATCTCCGCAATGGG
GAAGGCCCTGGTCGACCAGAGGGAGCTGTACCTGGGCCTGCTCTACCCCACGGAGGACTACAAGGTATAC
GGCTACGTCACCAACTCCAAGGTGAAGTTTGTCATGGTGGTAGATTCCTCCAACACAGCCCTTCGAGACA
ACGAAATTCGCAGCATGTTCCGGAAGCTACACAACTCCTACACAGACGTGATGTGCAACCCCTTCTACAA
CCCGGGGGACCGCATCCAGTCCAGCAGGGCCTTTGATAACATGGTGACGTCGATGATGATACAGGTGTGC
TGA

Translation (140 aa):
MAVCIAVIAKENYPLYIRSTPTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLGLLYPTEDYKVY
GYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPGDRIQSSRAFDNMVTSMMIQVC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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