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Report for CCDS7451.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7451.1 Public Homo sapiens 10 LCOR 24 110 108 CCDS HistoryNCBI Gene:84458Re-query CCDS DB by CCDS ID:7451.1Re-query CCDS DB by GeneID:84458See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7451.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356016.7 ENSP00000348298.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000356016.7Link to Ensembl Protein Viewer:ENSP00000348298.2Re-query CCDS DB by Nucleotide ID:ENST00000356016Re-query CCDS DB by Protein ID:ENSP00000348298
Original member Current member EBI ENST00000371097.8 ENSP00000360138.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000371097.8Link to Ensembl Protein Viewer:ENSP00000360138.3Re-query CCDS DB by Nucleotide ID:ENST00000371097Re-query CCDS DB by Protein ID:ENSP00000360138
Original member Current member EBI ENST00000371103.8 ENSP00000360144.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000371103.8Link to Ensembl Protein Viewer:ENSP00000360144.3Re-query CCDS DB by Nucleotide ID:ENST00000371103Re-query CCDS DB by Protein ID:ENSP00000360144
Original member Current member EBI ENST00000675537.1 ENSP00000501560.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675537.1Link to Ensembl Protein Viewer:ENSP00000501560.1Re-query CCDS DB by Nucleotide ID:ENST00000675537Re-query CCDS DB by Protein ID:ENSP00000501560
Original member Current member EBI ENST00000675971.1 ENSP00000501639.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675971.1Link to Ensembl Protein Viewer:ENSP00000501639.1Re-query CCDS DB by Nucleotide ID:ENST00000675971Re-query CCDS DB by Protein ID:ENSP00000501639
Original member Current member EBI ENST00000675471.1 ENSP00000502633.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675471.1Link to Ensembl Protein Viewer:ENSP00000502633.1Re-query CCDS DB by Nucleotide ID:ENST00000675471Re-query CCDS DB by Protein ID:ENSP00000502633
Original member Current member NCBI NM_001170765.2 NP_001164236.1 Accepted alive Link to Nucleotide Sequence:NM_001170765.2Link to Protein Sequence:NP_001164236.1Re-query CCDS DB by Nucleotide ID:NM_001170765Re-query CCDS DB by Protein ID:NP_001164236Link to BLAST:NP_001164236.1
Original member Current member NCBI NM_032440.4 NP_115816.2 Accepted alive Link to Nucleotide Sequence:NM_032440.4Link to Protein Sequence:NP_115816.2Re-query CCDS DB by Nucleotide ID:NM_032440Re-query CCDS DB by Protein ID:NP_115816Link to BLAST:NP_115816.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164236.1 433 Q96JN0-1 433 100% 0 0
NP_115816.2 433 Q96JN0-1 433 100% 0 0

Chromosomal Locations for CCDS 7451.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 96949058 96949295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 96952103 96952196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 96954953 96955922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1302 nt):
ATGCAGCGAATGATCCAACAATTTGCTGCTGAATATACCTCAAAAAATAGCTCTACTCAGGACCCCAGCC
AGCCCAATAGCACAAAGAACCAAAGCCTGCCGAAAGCATCTCCAGTCACCACCTCTCCCACGGCTGCAAC
TACTCAGAACCCTGTGCTCAGCAAACTTCTCATGGCTGACCAAGACTCACCTCTGGACCTTACTGTCAGA
AAGTCTCAGTCAGAACCTAGCGAACAAGACGGTGTACTTGATCTGTCCACTAAGAAAAGTCCATGTGCTG
GCAGCACTTCCCTGAGCCACTCTCCAGGCTGCTCCAGTACTCAAGGGAACGGGCGACCTGGGAGACCCAG
CCAGTACCGCCCAGACGGACTTCGGAGTGGTGATGGGGTACCTCCAAGAAGCTTACAGGATGGAACCAGG
GAAGGTTTTGGACACTCCACATCACTCAAAGTTCCACTGGCTCGATCCCTGCAGATTAGTGAAGAACTAC
TGAGCAGAAACCAATTGTCCACAGCTGCCAGCCTTGGGCCATCTGGATTACAGAATCATGGACAACACTT
AATATTATCCAGGGAAGCCTCTTGGGCAAAACCACATTACGAGTTCAACCTCAGCCGTATGAAGTTCAGG
GGAAATGGTGCACTCAGCAACATCAGTGACCTTCCTTTTCTTGCAGAAAACTCTGCCTTTCCAAAAATGG
CACTTCAAGCAAAACAAGATGGAAAAAAGGATGTGAGCCATTCATCTCCTGTAGATTTAAAGATACCACA
AGTTCGAGGAATGGATCTTTCTTGGGAGTCTCGCACTGGTGATCAGTACAGCTATAGCTCTTTGGTAATG
GGTTCACAAACGGAGAGCGCGCTTAGTAAAAAATTAAGGGCTATTCTTCCAAAACAAAGTAGAAAAAGCA
TGTTAGATGCTGGACCCGATTCTTGGGGCTCAGATGCTGAGCAGTCTACCTCTGGACAGCCATATCCCAC
ATCGGATCAAGAAGGAGACCCTGGCTCCAAGCAGCCTCGGAAGAAAAGAGGGCGTTACAGACAGTACAAC
AGTGAGATACTGGAGGAAGCAATCTCAGTGGTTATGAGTGGAAAAATGAGTGTTTCCAAAGCTCAGAGTA
TTTATGGGATTCCCCACAGTACACTGGAGTACAAAGTAAAGGAGAGGCTGGGCACTTTGAAAAACCCTCC
AAAGAAAAAGATGAAATTAATGAGGTCGGAGGGGCCAGATGTTTCTGTAAAGATTGAATTAGATCCCCAG
GGAGAGGCAGCACAAAGTGCAAATGAATCAAAAAACGAGTAG

Translation (433 aa):
MQRMIQQFAAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVR
KSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLRSGDGVPPRSLQDGTR
EGFGHSTSLKVPLARSLQISEELLSRNQLSTAASLGPSGLQNHGQHLILSREASWAKPHYEFNLSRMKFR
GNGALSNISDLPFLAENSAFPKMALQAKQDGKKDVSHSSPVDLKIPQVRGMDLSWESRTGDQYSYSSLVM
GSQTESALSKKLRAILPKQSRKSMLDAGPDSWGSDAEQSTSGQPYPTSDQEGDPGSKQPRKKRGRYRQYN
SEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPPKKKMKLMRSEGPDVSVKIELDPQ
GEAAQSANESKNE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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