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Report for CCDS9456.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9456.2 Public Homo sapiens 13 CLN5 24 110 108 CCDS HistoryNCBI Gene:1203Re-query CCDS DB by CCDS ID:9456.2Re-query CCDS DB by GeneID:1203See the combined annotation on chromosome 13 in Sequence Viewer

Public Note for CCDS 9456.1
The coding region has been updated to shorten the N-terminus to one that is more supported by available conservation data or publications.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 9456.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377453.9 ENSP00000366673.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377453.9Link to Ensembl Protein Viewer:ENSP00000366673.5Re-query CCDS DB by Nucleotide ID:ENST00000377453Re-query CCDS DB by Protein ID:ENSP00000366673
Original member Current member EBI ENST00000636183.2 ENSP00000490181.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000636183.2Link to Ensembl Protein Viewer:ENSP00000490181.2Re-query CCDS DB by Nucleotide ID:ENST00000636183Re-query CCDS DB by Protein ID:ENSP00000490181
Original member Current member NCBI NM_006493.4 NP_006484.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006493.4Link to Protein Sequence:NP_006484.2Re-query CCDS DB by Nucleotide ID:NM_006493Re-query CCDS DB by Protein ID:NP_006484Link to BLAST:NP_006484.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006484.2 358 O75503 358 100% 0 0

Chromosomal Locations for CCDS 9456.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 76992099 76992271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 76995063 76995228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 76995902 76996127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77000458 77000969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1077 nt):
ATGGCGCAGGAGGTAGACACGGCACAGGGCGCCGAGATGCGGCGGGGCGCGGGCGCGGCTCGGGGACGCG
CTTCCTGGTGCTGGGCCCTGGCGCTGCTTTGGCTCGCGGTGGTTCCGGGCTGGTCCCGGGTCTCGGGCAT
CCCCTCCCGGCGCCACTGGCCGGTGCCCTACAAGCGCTTTGACTTCCGTCCAAAACCTGATCCTTATTGT
CAAGCTAAGTATACTTTCTGTCCAACTGGCTCACCTATCCCAGTTATGGAGGGTGATGATGACATTGAAG
TTTTTCGATTACAAGCCCCAGTATGGGAATTTAAATATGGAGACCTCCTGGGACACTTGAAAATTATGCA
TGATGCCATTGGATTCAGAAGTACATTAACTGGCAAGAACTACACAATGGAATGGTATGAACTTTTCCAA
CTTGGCAACTGTACATTTCCCCATCTCCGACCTGAAATGGATGCCCCTTTCTGGTGTAATCAAGGCGCTG
CCTGCTTTTTTGAGGGAATTGATGATGTTCACTGGAAGGAAAATGGGACATTAGTTCAAGTAGCAACTAT
ATCAGGAAACATGTTCAACCAAATGGCAAAGTGGGTGAAACAGGACAATGAAACAGGAATTTATTATGAG
ACATGGAATGTAAAAGCCAGCCCAGAAAAGGGGGCAGAGACATGGTTTGATTCCTACGACTGTTCCAAAT
TTGTGTTAAGGACCTTTAACAAGTTGGCTGAATTTGGAGCAGAGTTCAAGAACATAGAAACCAACTATAC
AAGAATATTTCTTTACAGTGGAGAACCTACTTATCTGGGAAATGAAACATCTGTTTTTGGGCCAACAGGA
AACAAGACTCTTGGTTTAGCCATAAAAAGATTTTATTACCCCTTCAAACCACATTTGCCAACTAAAGAAT
TTCTGTTGAGTCTCTTGCAAATTTTTGATGCAGTGATTGTGCACAAACAGTTCTATTTGTTTTATAATTT
TGAATATTGGTTTTTACCTATGAAATTCCCTTTTATTAAAATAACATATGAAGAAATCCCTTTACCTATC
AGAAACAAAACACTCTCTGGTTTATAA

Translation (358 aa):
MAQEVDTAQGAEMRRGAGAARGRASWCWALALLWLAVVPGWSRVSGIPSRRHWPVPYKRFDFRPKPDPYC
QAKYTFCPTGSPIPVMEGDDDIEVFRLQAPVWEFKYGDLLGHLKIMHDAIGFRSTLTGKNYTMEWYELFQ
LGNCTFPHLRPEMDAPFWCNQGAACFFEGIDDVHWKENGTLVQVATISGNMFNQMAKWVKQDNETGIYYE
TWNVKASPEKGAETWFDSYDCSKFVLRTFNKLAEFGAEFKNIETNYTRIFLYSGEPTYLGNETSVFGPTG
NKTLGLAIKRFYYPFKPHLPTKEFLLSLLQIFDAVIVHKQFYLFYNFEYWFLPMKFPFIKITYEEIPLPI
RNKTLSGL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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