CCDS Report for Consensus CDS

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Report for CCDS9273.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
9273.1	Public	Homo sapiens	12	SFSWAP	24	110	108

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9273.1

Original	Current	Source	Nucleotide ID	Protein ID	MANE	Status in CCDS	Seq. Status	Links
		EBI	ENST00000261674.9	ENSP00000261674.4	MANE Select	Accepted	alive
		NCBI	NM_004592.4	NP_004583.2	MANE Select	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_004583.2	951	Q12872-1	951	100%	0	0

Chromosomal Locations for CCDS 9273.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)

Genome Browser links:

Chromosome	Start	Stop
12	131711230	131711447
12	131714071	131714240
12	131714822	131714953
12	131719454	131719539
12	131725405	131725630
12	131726940	131727052
12	131728293	131728428
12	131753123	131753363
12	131754368	131754499
12	131755386	131755479
12	131756473	131756644
12	131764456	131764686
12	131766118	131766308
12	131778065	131778330
12	131786463	131786588
12	131797178	131797360
12	131799037	131799109
12	131799423	131799488

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2856 nt):
ATGTACGGCGCGAGCGGGGGCCGCGCCAAACCCGAGAGGAAAAGCGGCGCGAAGGAGGAGGCCGGGCCAG GCGGTGCCGGCGGTGGGGGCAGCCGAGTGGAGCTCTTGGTTTTCGGCTATGCCTGCAAGCTGTTCCGGGA CGACGAGCGGGCCCTGGCTCAGGAACAGGGACAGCACCTCATCCCCTGGATGGGGGACCACAAGATCCTC ATCGACAGATATGATGGACGTGGTCACCTGCATGACCTTTCTGAGTACGATGCTGAGTATTCCACGTGGA ACAGAGATTATCAGCTGTCTGAAGAGGAGGCGCGAATAGAGGCCCTGTGTGATGAAGAGAGGTATTTAGC CTTGCATACGGACTTGCTTGAGGAGGAGGCAAGGCAAGAGGAAGAATACAAGCGATTGAGTGAAGCACTA GCAGAGGATGGGAGCTACAATGCCGTGGGGTTCACTTACGGTAGCGACTATTACGACCCGTCAGAGCCGA CGGAGGAGGAGGAGCCTTCCAAACAGAGAGAAAAAAATGAGGCCGAAAATTTAGAGGAAAATGAAGAGCC CTTCGTTGCCCCCTTAGGATTGAGCGTCCCGTCTGACGTGGAGTTGCCACCAACCGCTAAAATGCACGCC ATCATCGAGCGCACGGCCAGCTTCGTGTGCAGGCAGGGAGCACAGTTTGAGATCATGCTGAAGGCCAAGC AGGCCCGGAACTCCCAGTTTGACTTTCTGCGCTTCGACCACTACCTCAACCCCTACTATAAGTTCATCCA GAAAGCCATGAAAGAGGGACGCTACACTGTCCTGGCAGAAAACAAAAGTGACGAGAAAAAAAAATCAGGA GTCAGCTCTGACAATGAAGATGATGATGATGAAGAAGATGGGAATTACCTTCATCCCTCTCTCTTTGCCT CCAAGAAGTGTAACCGCCTTGAAGAGCTGATGAAGCCCTTGAAGGTAGTGGACCCAGATCATCCCCTCGC AGCACTTGTTCGTAAGGCACAGGCTGACAGTTCCACTCCCACCCCACACAACGCAGACGGTGCGCCTGTG CAGCCCTCCCAGGTGGAGTACACGGCAGACTCGACCGTGGCAGCCATGTATTACAGCTACTACATGCTAC CGGACGGCACTTACTGCCTGGCGCCGCCCCCTCCCGGAATCGACGTGACTACTTACTACAGCACCCTTCC TGCTGGCGTGACCGTGTCTAACTCCCCTGGAGTGACGACCACCGCCCCACCACCTCCTGGGACCACACCA CTACCGCCCCCAACCACAGCAGAGACTAGCAGCGGGGCCACCTCCACAACCACCACCACAAGTGCACTTG CCCCCGTGGCCGCCATCATCCCCCCGCCCCCCGACGTCCAGCCCGTGATTGACAAGCTGGCCGAGTATGT CGCCAGGAACGGCCTGAAGTTCGAGACCAGTGTTCGTGCCAAGAATGATCAAAGATTTGAGTTCCTGCAG CCGTGGCACCAGTATAATGCTTATTATGAGTTTAAGAAGCAGTTCTTCCTCCAGAAAGAAGGGGGCGATA GCATGCAGGCTGTGTCTGCACCAGAAGAGGCTCCCACAGACTCTGCTCCCGAGAAGCCAAGTGATGCTGG GGAGGATGGCGCGCCTGAAGACGCAGCCGAGGTGGGAGCACGGGCAGGCTCAGGCGGGAAGAAGGAGGCA TCGTCCAGTAAGACCGTCCCGGACGGGAAGCTGGTGAAAGCTTCCTTTGCTCCAATAAGCTTTGCAATCA AGGCCAAAGAAAATGATCTGCTTCCCCTGGAAAAAAATCGTGTTAAGCTAGATGATGACAGTGATGATGA TGAAGAAAGCAAAGAAGGCCAAGAAAGTTCTAGTAGTGCTGCAAACACTAACCCAGCAGTTGCCCCACCC TGTGTAGTTGTTGAGGAGAAGAAGCCTCAACTTACCCAGGAGGAGCTAGAAGCAAAGCAAGCAAAGCAAA AGCTGGAAGATCGCCTCGCAGCTGCTGCCCGGGAAAAGCTGGCCCAGGCGTCTAAGGAGTCAAAAGAGAA ACAGCTTCAAGCAGAACGTAAAAGGAAAGCGGCGTTATTTTTACAGACCCTCAAAAATCCTCTGCCGGAA GCAGAAGCTGGGAAAATTGAGGAGAGTCCTTTCAGTGTCGAGGAATCCAGCACTACGCCCTGCCCTCTAC TGACTGGAGGCAGGCCTCTGCCTACTTTAGAAGTTAAACCACCCGATAGGCCTTCGAGCAAAAGCAAAGA TCCACCGAGAGAAGAAGAGAAAGAAAAGAAAAAGAAAAAGCACAAAAAAAGATCTCGAACAAGATCACGT TCTCCCAAGTACCATTCGTCATCCAAGTCCAGGTCTAGATCACACTCAAAAGCAAAGCATTCTCTTCCCA GTGCCTATCGGACAGTGCGGCGGTCGAGGTCCCGCTCCCGGTCCCCTCGGAGGAGAGCCCACTCCCCTGA GAGACGGAGGGAAGAGAGGAGTGTGCCCACTGCCTACCGCGTGAGCCGCAGCCCTGGGGCCAGTAGGAAG CGGACCCGCTCCAGAAGTCCCCACGAGAAGAAGAAGAAGAGGCGGTCCCGGTCGCGGACCAAGTCCAAGG CCAGGTCTCAGTCGGTGTCACCCAGCAAGCAGGCAGCGCCCCGGCCCGCGGCCCCCGCGGCCCACTCGGC GCACTCAGCCAGCGTCTCCCCTGTGGAGAGTCGGGGCTCCAGCCAGGAGCGCTCCAGGGGAGTCTCTCAG GAAAAAGAAGCCCAGATCTCTTCAGCAATCGTTTCTTCCGTGCAGAGCAAAATCACTCAGGATCTCATGG CCAAAGTCAGAGCGATGCTTGCAGCTTCCAAAAACCTGCAAACCAGCGCTTCCTGA
Translation (951 aa):
MYGASGGRAKPERKSGAKEEAGPGGAGGGGSRVELLVFGYACKLFRDDERALAQEQGQHLIPWMGDHKIL IDRYDGRGHLHDLSEYDAEYSTWNRDYQLSEEEARIEALCDEERYLALHTDLLEEEARQEEEYKRLSEAL AEDGSYNAVGFTYGSDYYDPSEPTEEEEPSKQREKNEAENLEENEEPFVAPLGLSVPSDVELPPTAKMHA IIERTASFVCRQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFIQKAMKEGRYTVLAENKSDEKKKSG VSSDNEDDDDEEDGNYLHPSLFASKKCNRLEELMKPLKVVDPDHPLAALVRKAQADSSTPTPHNADGAPV QPSQVEYTADSTVAAMYYSYYMLPDGTYCLAPPPPGIDVTTYYSTLPAGVTVSNSPGVTTTAPPPPGTTP LPPPTTAETSSGATSTTTTTSALAPVAAIIPPPPDVQPVIDKLAEYVARNGLKFETSVRAKNDQRFEFLQ PWHQYNAYYEFKKQFFLQKEGGDSMQAVSAPEEAPTDSAPEKPSDAGEDGAPEDAAEVGARAGSGGKKEA SSSKTVPDGKLVKASFAPISFAIKAKENDLLPLEKNRVKLDDDSDDDEESKEGQESSSSAANTNPAVAPP CVVVEEKKPQLTQEELEAKQAKQKLEDRLAAAAREKLAQASKESKEKQLQAERKRKAALFLQTLKNPLPE AEAGKIEESPFSVEESSTTPCPLLTGGRPLPTLEVKPPDRPSSKSKDPPREEEKEKKKKKHKKRSRTRSR SPKYHSSSKSRSRSHSKAKHSLPSAYRTVRRSRSRSRSPRRRAHSPERRREERSVPTAYRVSRSPGASRK RTRSRSPHEKKKKRRSRSRTKSKARSQSVSPSKQAAPRPAAPAAHSAHSASVSPVESRGSSQERSRGVSQ EKEAQISSAIVSSVQSKITQDLMAKVRAMLAASKNLQTSAS

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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