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Report for CCDS4013.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4013.1 Public Homo sapiens 5 MRPS27 24 110 108 CCDS HistoryNCBI Gene:23107Re-query CCDS DB by CCDS ID:4013.1Re-query CCDS DB by GeneID:23107See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4013.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261413.10 ENSP00000261413.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261413.10Link to Ensembl Protein Viewer:ENSP00000261413.5Re-query CCDS DB by Nucleotide ID:ENST00000261413Re-query CCDS DB by Protein ID:ENSP00000261413
Original member Current member EBI ENST00000694989.1 ENSP00000511631.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000694989.1Link to Ensembl Protein Viewer:ENSP00000511631.1Re-query CCDS DB by Nucleotide ID:ENST00000694989Re-query CCDS DB by Protein ID:ENSP00000511631
Original member Current member EBI ENST00000694990.1 ENSP00000511632.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000694990.1Link to Ensembl Protein Viewer:ENSP00000511632.1Re-query CCDS DB by Nucleotide ID:ENST00000694990Re-query CCDS DB by Protein ID:ENSP00000511632
Original member Current member NCBI NM_015084.3 NP_055899.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015084.3Link to Protein Sequence:NP_055899.2Re-query CCDS DB by Nucleotide ID:NM_015084Re-query CCDS DB by Protein ID:NP_055899Link to BLAST:NP_055899.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055899.2 414 Q92552-1 414 100% 0 0

Chromosomal Locations for CCDS 4013.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 72220909 72221148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72223683 72223850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72226057 72226199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72228266 72228368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72232443 72232558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72234119 72234197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72238014 72238128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72295531 72295589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72297632 72297702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72314081 72314158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72320149 72320221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1245 nt):
ATGGCTGCCTCCATAGTGCGGCGCGGGATGCTCCTGGCGCGGCAAGTGGTTCTTCCTCAGCTCTCTCCTG
CAGGTAAAAGATACCTGCTTTCTTCAGCCTATGTAGACAGCCACAAATGGGAAGCAAGAGAAAAAGAACA
TTACTGTCTTGCTGATCTTGCATCTTTAATGGATAAAACATTTGAGAGAAAGTTGCCTGTTAGTTCTTTA
ACAATATCACGGCTTATAGACAACATTTCCTCTCGGGAAGAGATAGATCATGCAGAGTATTACCTTTACA
AGTTTCGACACAGCCCCAACTGCTGGTACCTGAGAAACTGGACTATCCACACCTGGATTAGGCAGTGTCT
AAAATATGATGCACAAGACAAAGCCCTATATACCCTTGTAAATAAGGTTCAATATGGAATTTTTCCAGAT
AACTTTACATTCAATTTACTGATGGATTCTTTCATAAAGAAAGAAAATTACAAAGATGCTTTATCTGTGG
TTTTTGAGGTCATGATGCAAGAAGCCTTTGAAGTGCCTTCCACCCAACTTCTCTCCCTCTATGTTTTATT
TCATTGCCTGGCAAAGAAGACAGACTTCAGTTGGGAAGAGGAGAGGAACTTTGGTGCATCCCTTTTGCTT
CCAGGCCTAAAACAAAAGAACTCAGTGGGTTTCAGTTCCCAGTTGTATGGCTATGCACTTCTTGGGAAGG
TGGAGTTGCAGCAAGGGCTACGGGCTGTGTACCACAACATGCCTCTGATATGGAAACCAGGCTACCTTGA
CAGAGCCCTTCAAGTGATGGAGAAAGTGGCTGCCTCCCCAGAAGACATAAAGCTGTGTAGAGAAGCGCTC
GATGTGCTGGGTGCAGTGCTGAAGGCTCTGACTTCAGCTGATGGGGCTTCAGAGGAGCAGTCCCAAAATG
ATGAAGACAACCAGGGGTCAGAAAAACTGGTGGAGCAGTTAGACATCGAGGAAACAGAGCAGTCCAAGCT
TCCTCAATACCTGGAACGATTTAAGGCCTTACATTCTAAGCTTCAAGCTCTGGGCAAAATTGAGTCAGAA
GGTCTTTTAAGTCTGACCACCCAGCTTGTCAAGGAAAAACTCTCCACCTGTGAAGCAGAGGACATCGCCA
CCTATGAGCAGAATCTGCAGCAGTGGCATCTAGACCTTGTACAGTTGATCCAGAGAGAACAGCAACAGAG
GGAGCAAGCGAAGCAGGAGTACCAGGCTCAGAAAGCAGCAAAGGCATCTGCCTAA

Translation (414 aa):
MAASIVRRGMLLARQVVLPQLSPAGKRYLLSSAYVDSHKWEAREKEHYCLADLASLMDKTFERKLPVSSL
TISRLIDNISSREEIDHAEYYLYKFRHSPNCWYLRNWTIHTWIRQCLKYDAQDKALYTLVNKVQYGIFPD
NFTFNLLMDSFIKKENYKDALSVVFEVMMQEAFEVPSTQLLSLYVLFHCLAKKTDFSWEEERNFGASLLL
PGLKQKNSVGFSSQLYGYALLGKVELQQGLRAVYHNMPLIWKPGYLDRALQVMEKVAASPEDIKLCREAL
DVLGAVLKALTSADGASEEQSQNDEDNQGSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQALGKIESE
GLLSLTTQLVKEKLSTCEAEDIATYEQNLQQWHLDLVQLIQREQQQREQAKQEYQAQKAAKASA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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