NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS44354.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44354.1 Public Homo sapiens 10 CELF2 24 110 108 CCDS HistoryNCBI Gene:10659Re-query CCDS DB by CCDS ID:44354.1Re-query CCDS DB by GeneID:10659See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44354.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000416382.6 ENSP00000406451.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000416382.6Link to Ensembl Protein Viewer:ENSP00000406451.2Re-query CCDS DB by Nucleotide ID:ENST00000416382Re-query CCDS DB by Protein ID:ENSP00000406451
Original member Current member EBI ENST00000631460.1 ENSP00000488582.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000631460.1Link to Ensembl Protein Viewer:ENSP00000488582.1Re-query CCDS DB by Nucleotide ID:ENST00000631460Re-query CCDS DB by Protein ID:ENSP00000488582
Original member Current member NCBI NM_001025077.3 NP_001020248.1 Accepted alive Link to Nucleotide Sequence:NM_001025077.3Link to Protein Sequence:NP_001020248.1Re-query CCDS DB by Nucleotide ID:NM_001025077Re-query CCDS DB by Protein ID:NP_001020248Link to BLAST:NP_001020248.1
Original member Current member NCBI NM_001326332.2 NP_001313261.1 Accepted alive Link to Nucleotide Sequence:NM_001326332.2Link to Protein Sequence:NP_001313261.1Re-query CCDS DB by Nucleotide ID:NM_001326332Re-query CCDS DB by Protein ID:NP_001313261Link to BLAST:NP_001313261.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020248.1 508 O95319-1 508 100% 0 0
NP_001313261.1 508 O95319-1 508 100% 0 0

Chromosomal Locations for CCDS 44354.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 11005388 11005440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11165486 11165682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11217425 11217507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11249153 11249201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11257738 11257872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11266598 11266677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11270666 11270824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11275057 11275120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11288418 11288552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11314139 11314258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11321207 11321386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11325836 11325979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11328926 11329053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1527 nt):
ATGCGCTGTCCCAAATCCGCTGTTACTATGAGAAATGAAGAGCTGCTTTTAAGTAACGGCACAGCCAACA
AGATGAACGGAGCTTTGGATCACTCAGACCAACCAGACCCAGATGCCATTAAGATGTTTGTCGGACAGAT
CCCCCGGTCATGGTCGGAAAAGGAGCTGAAAGAACTTTTTGAGCCTTACGGAGCCGTCTACCAGATCAAC
GTCCTCCGGGACCGGAGTCAGAACCCTCCGCAGAGTAAAGGTTGTTGTTTCGTAACATTTTATACAAGAA
AAGCTGCACTTGAGGCCCAGAATGCACTGCACAATATTAAAACTTTACCTGGGATGCATCATCCCATTCA
GATGAAACCTGCAGATAGTGAAAAGTCCAACGCTGTGGAAGACAGAAAATTGTTCATAGGAATGGTATCG
AAGAAATGTAATGAGAACGACATCAGGGTGATGTTCTCTCCATTTGGCCAGATAGAAGAATGCCGGATCC
TCCGGGGACCTGATGGGCTGAGTCGAGGCTGTGCGTTTGTCACATTTTCTACAAGGGCAATGGCACAGAA
TGCAATCAAAGCCATGCATCAGTCTCAGACCATGGAGGGCTGCTCTTCACCTATCGTGGTGAAGTTTGCT
GACACTCAGAAGGACAAAGAGCAAAGGCGCCTCCAGCAGCAGCTCGCTCAGCAGATGCAGCAGCTCAACA
CTGCCACCTGGGGGAACCTGACAGGGCTGGGCGGACTGACCCCACAGTATCTGGCGCTCCTGCAGCAGGC
CACCTCCTCCAGCAACCTGGGTGCGTTCAGCGGCATTCAACAAATGGCAGGCATGAATGCTTTACAGTTG
CAGAACCTGGCGACGCTGGCTGCTGCTGCAGCTGCGGCCCAGACCTCAGCCACCAGCACCAATGCAAACC
CTCTCTCTACCACGAGCAGCGCCCTGGGAGCCCTCACGAGTCCCGTGGCTGCTTCAACCCCCAACTCCAC
TGCTGGTGCAGCCATGAACTCCTTGACCTCTCTCGGGACTCTGCAAGGACTGGCTGGAGCCACTGTTGGA
CTGAATAATATTAATGCACTAGCAGGTATGGCGGCTCTGAATGGAGGACTTGGCGCCACAGGCTTGACGA
ATGGCACGGCTGGCACCATGGACGCCCTCACCCAGGCCTACTCAGGAATTCAACAGTACGCAGCCGCCGC
GCTGCCCACTCTGTACAGCCAGAGCCTGCTGCAGCAGCAGAGCGCTGCAGGCAGCCAGAAGGAAGGTCCA
GAGGGGGCAAACCTCTTTATTTACCACCTTCCACAGGAATTTGGAGACCAGGACATTCTGCAGATGTTCA
TGCCTTTTGGAAATGTTATCTCTGCTAAAGTCTTCATTGACAAACAGACCAATCTGAGCAAGTGCTTTGG
TTTTGTTAGCTACGACAATCCAGTCTCTGCACAAGCTGCTATCCAAGCTATGAATGGCTTTCAGATCGGC
ATGAAACGCTTGAAGGTGCAGCTGAAGCGTTCCAAAAACGACAGCAAACCTTACTGA

Translation (508 aa):
MRCPKSAVTMRNEELLLSNGTANKMNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQIN
VLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVS
KKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFA
DTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQL
QNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGLAGATVG
LNNINALAGMAALNGGLGATGLTNGTAGTMDALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGP
EGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIG
MKRLKVQLKRSKNDSKPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH