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Report for CCDS42508.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42508.1 Public Homo sapiens 19 HOOK2 24 110 108 CCDS HistoryNCBI Gene:29911Re-query CCDS DB by CCDS ID:42508.1Re-query CCDS DB by GeneID:29911See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42508.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397668.8 ENSP00000380785.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397668.8Link to Ensembl Protein Viewer:ENSP00000380785.2Re-query CCDS DB by Nucleotide ID:ENST00000397668Re-query CCDS DB by Protein ID:ENSP00000380785
Original member Current member NCBI NM_013312.3 NP_037444.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_013312.3Link to Protein Sequence:NP_037444.2Re-query CCDS DB by Nucleotide ID:NM_013312Re-query CCDS DB by Protein ID:NP_037444Link to BLAST:NP_037444.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_037444.2 719 Q96ED9-1 719 100% 0 0

Chromosomal Locations for CCDS 42508.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 12763282 12763431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12763528 12763599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12763668 12763778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12764814 12764917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12764999 12765081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12765690 12765724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12765829 12765834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12765927 12766014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12766103 12766240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12767395 12767464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12767816 12767903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12768013 12768123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12769881 12770082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12770932 12771072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12771159 12771319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12771397 12771477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12772190 12772252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12772613 12772680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12772780 12772912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12772994 12773044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12774669 12774741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12774812 12774897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12775405 12775449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2160 nt):
ATGAGCGTGGACAAAGCTGAGCTATGCGGGTCTCTGCTCACCTGGTTACAGACGTTCCACGTTCCGTCTC
CCTGTGCCAGCCCTCAGGACCTGAGCAGCGGCCTTGCCGTAGCCTATGTGCTGAACCAGATAGACCCCTC
CTGGTTCAACGAGGCATGGCTCCAGGGCATCTCGGAAGATCCAGGTCCCAACTGGAAGCTGAAGGTCAGC
AATCTGAAGATGGTCTTACGGAGCCTAGTAGAGTACTCCCAGGATGTCCTGGCGCATCCTGTGTCAGAAG
AGCATCTCCCAGATGTGAGCCTCATTGGAGAGTTCTCAGACCCGGCAGAGCTCGGCAAGCTGCTTCAGCT
GGTGCTGGGCTGTGCCATCAGTTGCGAGAAAAAGCAGGACCACATCCAGAGAATCATGACGCTGGAAGAA
TCGGTTCAGCATGTGGTGATGGAAGCCATCCAAGAGCTCATGACCAAAGACACTCCTGACTCCCTGTCAC
CAGAGACGTATGGCAACTTTGACAGCCAGTCCCGCAGGTACTATTTCCTAAGTGAGGAGGCTGAGGAGGG
GGACGAATTACAGCAGCGCTGTCTGGATCTGGAGCGGCAGCTGATGCTCCTGTCAGAGGAGAAGCAGAGC
CTGGCGCAAGAGAATGCAGGGCTGCGGGAGCGGATGGGCCGGCCTGAAGGCGAGGGTACCCCAGGTCTCA
CTGCCAAGAAGCTGCTGCTGCTGCAATCCCAGCTGGAGCAGTTGCAGGAGGAGAACTTCAGGCTGGAGAG
TGGCAGGGAGGATGAGCGCCTGCGCTGTGCCGAGCTGGAGAGGGAGGTTGCGGAGCTGCAGCACCGGAAC
CAGGCGCTGACTAGCCTGGCCCAGGAGGCACAGGCCCTGAAGGATGAGATGGATGAACTACGGCAGTCTT
CGGAGCGTGCTGGGCAGCTGGAGGCCACGCTGACCAGTTGCCGGCGCCGCTTGGGCGAGCTGAGGGAGCT
GCGGCGGCAGGTGCGGCAGCTGGAGGAACGCAACGCCGGCCACGCCGAGCGCACGCGACAACTGGAGGAT
GAGCTACGCCGAGCGGGCTCCCTGCGCGCCCAGCTGGAGGCGCAGCGGCGGCAGGTGCAGGAACTGCAGG
GCCAGCGGCAGGAGGAGGCCATGAAGGCCGAGAAATGGCTATTTGAATGCCGCAACCTGGAGGAAAAGTA
TGAGTCGGTGACAAAGGAGAAGGAGCGGCTGTTGGCGGAGCGGGACTCCTTGCGGGAGGCCAATGAGGAG
CTGCGCTGCGCCCAGCTGCAGCCGCGGGGGTTGACCCAGGCCGATCCCTCACTGGATCCCACCTCCACAC
CCGTGGATAACTTAGCCGCAGAGATCCTGCCTGCGGAGCTCAGGGAGACGCTCCTGCGGCTTCAGCTGGA
GAACAAGCGGCTGTGCAGGCAGGAGGCGGCCGACCGGGAGCGGCAGGAGGAGCTGCAGCGCCACCTGGAG
GATGCCAACCGCGCGCGCCACGGGTTGGAGACGCAGCACCGGCTGAACCAGCAGCAGCTATCCGAGCTGC
GGGCCCAGGTGGAGGACCTGCAGAAAGCCCTGCAGGAGCAGGGGGGCAAGACTGAAGATGCCATTTCCAT
TTTGCTGAAAAGGAAGCTGGAGGAACATTTGCAGAAGCTTCATGAGGCAGATCTGGAGTTGCAGAGGAAG
CGGGAGTACATTGAGGAGCTGGAGCCACCCACTGACAGCAGCACAGCCCGGCGGATCGAGGAGCTGCAGC
ATAACTTGCAGAAGAAGGACGCGGACTTGCGGGCCATGGAGGAGCGATACCGCCGCTACGTGGACAAGGC
CCGCATGGTCATGCAGACCATGGAACCCAAGCAGCGGCCAGCTGCGGGGGCACCTCCAGAACTCCATTCC
CTGAGGACACAGCTCCGAGAACGGGATGTCCGCATCCGACACCTGGAGATGGACTTTGAGAAAAGCCGAA
GTCAGCGGGAGCAGGAAGAAAAGCTGCTCATCAGTGCCTGGTATAATATGGGCATGGCCTTGCAGCAGCG
AGCTGGGGAGGAGCGGGCGCCTGCCCATGCCCAGTCATTCCTGGCACAGCAGCGGCTGGCAACCAATTCT
CGCCGTGGACCCTTGGGACGCCTGGCATCTCTGAACCTTCGCCCCACTGACAAGCACTGA

Translation (719 aa):
MSVDKAELCGSLLTWLQTFHVPSPCASPQDLSSGLAVAYVLNQIDPSWFNEAWLQGISEDPGPNWKLKVS
NLKMVLRSLVEYSQDVLAHPVSEEHLPDVSLIGEFSDPAELGKLLQLVLGCAISCEKKQDHIQRIMTLEE
SVQHVVMEAIQELMTKDTPDSLSPETYGNFDSQSRRYYFLSEEAEEGDELQQRCLDLERQLMLLSEEKQS
LAQENAGLRERMGRPEGEGTPGLTAKKLLLLQSQLEQLQEENFRLESGREDERLRCAELEREVAELQHRN
QALTSLAQEAQALKDEMDELRQSSERAGQLEATLTSCRRRLGELRELRRQVRQLEERNAGHAERTRQLED
ELRRAGSLRAQLEAQRRQVQELQGQRQEEAMKAEKWLFECRNLEEKYESVTKEKERLLAERDSLREANEE
LRCAQLQPRGLTQADPSLDPTSTPVDNLAAEILPAELRETLLRLQLENKRLCRQEAADRERQEELQRHLE
DANRARHGLETQHRLNQQQLSELRAQVEDLQKALQEQGGKTEDAISILLKRKLEEHLQKLHEADLELQRK
REYIEELEPPTDSSTARRIEELQHNLQKKDADLRAMEERYRRYVDKARMVMQTMEPKQRPAAGAPPELHS
LRTQLRERDVRIRHLEMDFEKSRSQREQEEKLLISAWYNMGMALQQRAGEERAPAHAQSFLAQQRLATNS
RRGPLGRLASLNLRPTDKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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