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Report for CCDS73766.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73766.1 Public Homo sapiens 15 LINGO1 24 110 108 CCDS HistoryNCBI Gene:84894Re-query CCDS DB by CCDS ID:73766.1Re-query CCDS DB by GeneID:84894See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73766.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000561030.5 ENSP00000453853.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000561030.5Link to Ensembl Protein Viewer:ENSP00000453853.1Re-query CCDS DB by Nucleotide ID:ENST00000561030Re-query CCDS DB by Protein ID:ENSP00000453853
Original member Current member NCBI NM_001301186.2 NP_001288115.1 Accepted alive Link to Nucleotide Sequence:NM_001301186.2Link to Protein Sequence:NP_001288115.1Re-query CCDS DB by Nucleotide ID:NM_001301186Re-query CCDS DB by Protein ID:NP_001288115Link to BLAST:NP_001288115.1
Original member Current member NCBI NM_001301187.2 NP_001288116.1 Accepted alive Link to Nucleotide Sequence:NM_001301187.2Link to Protein Sequence:NP_001288116.1Re-query CCDS DB by Nucleotide ID:NM_001301187Re-query CCDS DB by Protein ID:NP_001288116Link to BLAST:NP_001288116.1
Original member Current member NCBI NM_001301189.2 NP_001288118.1 Accepted alive Link to Nucleotide Sequence:NM_001301189.2Link to Protein Sequence:NP_001288118.1Re-query CCDS DB by Nucleotide ID:NM_001301189Re-query CCDS DB by Protein ID:NP_001288118Link to BLAST:NP_001288118.1
Original member Current member NCBI NM_001301191.2 NP_001288120.1 Accepted alive Link to Nucleotide Sequence:NM_001301191.2Link to Protein Sequence:NP_001288120.1Re-query CCDS DB by Nucleotide ID:NM_001301191Re-query CCDS DB by Protein ID:NP_001288120Link to BLAST:NP_001288120.1
Original member Current member NCBI NM_001301192.2 NP_001288121.1 Accepted alive Link to Nucleotide Sequence:NM_001301192.2Link to Protein Sequence:NP_001288121.1Re-query CCDS DB by Nucleotide ID:NM_001301192Re-query CCDS DB by Protein ID:NP_001288121Link to BLAST:NP_001288121.1
Original member Current member NCBI NM_001301194.2 NP_001288123.1 Accepted alive Link to Nucleotide Sequence:NM_001301194.2Link to Protein Sequence:NP_001288123.1Re-query CCDS DB by Nucleotide ID:NM_001301194Re-query CCDS DB by Protein ID:NP_001288123Link to BLAST:NP_001288123.1
Original member Current member NCBI NM_001301195.2 NP_001288124.1 Accepted alive Link to Nucleotide Sequence:NM_001301195.2Link to Protein Sequence:NP_001288124.1Re-query CCDS DB by Nucleotide ID:NM_001301195Re-query CCDS DB by Protein ID:NP_001288124Link to BLAST:NP_001288124.1
Original member Current member NCBI NM_001301197.2 NP_001288126.1 Accepted alive Link to Nucleotide Sequence:NM_001301197.2Link to Protein Sequence:NP_001288126.1Re-query CCDS DB by Nucleotide ID:NM_001301197Re-query CCDS DB by Protein ID:NP_001288126Link to BLAST:NP_001288126.1
Original member Current member NCBI NM_001301198.2 NP_001288127.1 Accepted alive Link to Nucleotide Sequence:NM_001301198.2Link to Protein Sequence:NP_001288127.1Re-query CCDS DB by Nucleotide ID:NM_001301198Re-query CCDS DB by Protein ID:NP_001288127Link to BLAST:NP_001288127.1
Original member Current member NCBI NM_001301199.2 NP_001288128.1 Accepted alive Link to Nucleotide Sequence:NM_001301199.2Link to Protein Sequence:NP_001288128.1Re-query CCDS DB by Nucleotide ID:NM_001301199Re-query CCDS DB by Protein ID:NP_001288128Link to BLAST:NP_001288128.1
Original member Current member NCBI NM_001301200.2 NP_001288129.1 Accepted alive Link to Nucleotide Sequence:NM_001301200.2Link to Protein Sequence:NP_001288129.1Re-query CCDS DB by Nucleotide ID:NM_001301200Re-query CCDS DB by Protein ID:NP_001288129Link to BLAST:NP_001288129.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001288115.1 614 Q96FE5-2 614 100% 0 0
NP_001288116.1 614 Q96FE5-2 614 100% 0 0
NP_001288118.1 614 Q96FE5-2 614 100% 0 0
NP_001288120.1 614 Q96FE5-2 614 100% 0 0
NP_001288121.1 614 Q96FE5-2 614 100% 0 0
NP_001288123.1 614 Q96FE5-2 614 100% 0 0
NP_001288124.1 614 Q96FE5-2 614 100% 0 0
NP_001288126.1 614 Q96FE5-2 614 100% 0 0
NP_001288127.1 614 Q96FE5-2 614 100% 0 0
NP_001288128.1 614 Q96FE5-2 614 100% 0 0
NP_001288129.1 614 Q96FE5-2 614 100% 0 0

Chromosomal Locations for CCDS 73766.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 77614044 77615888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1845 nt):
ATGCTGGCGGGGGGCGTGAGGAGCATGCCCAGCCCCCTCCTGGCCTGCTGGCAGCCCATCCTCCTGCTGG
TGCTGGGCTCAGTGCTGTCAGGCTCGGCCACGGGCTGCCCGCCCCGCTGCGAGTGCTCCGCCCAGGACCG
CGCTGTGCTGTGCCACCGCAAGCGCTTTGTGGCAGTCCCCGAGGGCATCCCCACCGAGACGCGCCTGCTG
GACCTAGGCAAGAACCGCATCAAAACGCTCAACCAGGACGAGTTCGCCAGCTTCCCGCACCTGGAGGAGC
TGGAGCTCAACGAGAACATCGTGAGCGCCGTGGAGCCCGGCGCCTTCAACAACCTCTTCAACCTCCGGAC
GCTGGGTCTCCGCAGCAACCGCCTGAAGCTCATCCCGCTAGGCGTCTTCACTGGCCTCAGCAACCTGACC
AAGCTGGACATCAGCGAGAACAAGATCGTTATCCTACTGGACTACATGTTTCAGGACCTGTACAACCTCA
AGTCACTGGAGGTTGGCGACAATGACCTCGTCTACATCTCTCACCGCGCCTTCAGCGGCCTCAACAGCCT
GGAGCAGCTGACGCTGGAGAAATGCAACCTGACCTCCATCCCCACCGAGGCGCTGTCCCACCTGCACGGC
CTCATCGTCCTGAGGCTCCGGCACCTCAACATCAATGCCATCCGGGACTACTCCTTCAAGAGGCTGTACC
GACTCAAGGTCTTGGAGATCTCCCACTGGCCCTACTTGGACACCATGACACCCAACTGCCTCTACGGCCT
CAACCTGACGTCCCTGTCCATCACACACTGCAATCTGACCGCTGTGCCCTACCTGGCCGTCCGCCACCTA
GTCTATCTCCGCTTCCTCAACCTCTCCTACAACCCCATCAGCACCATTGAGGGCTCCATGTTGCATGAGC
TGCTCCGGCTGCAGGAGATCCAGCTGGTGGGCGGGCAGCTGGCCGTGGTGGAGCCCTATGCCTTCCGCGG
CCTCAACTACCTGCGCGTGCTCAATGTCTCTGGCAACCAGCTGACCACACTGGAGGAATCAGTCTTCCAC
TCGGTGGGCAACCTGGAGACACTCATCCTGGACTCCAACCCGCTGGCCTGCGACTGTCGGCTCCTGTGGG
TGTTCCGGCGCCGCTGGCGGCTCAACTTCAACCGGCAGCAGCCCACGTGCGCCACGCCCGAGTTTGTCCA
GGGCAAGGAGTTCAAGGACTTCCCTGATGTGCTACTGCCCAACTACTTCACCTGCCGCCGCGCCCGCATC
CGGGACCGCAAGGCCCAGCAGGTGTTTGTGGACGAGGGCCACACGGTGCAGTTTGTGTGCCGGGCCGATG
GCGACCCGCCGCCCGCCATCCTCTGGCTCTCACCCCGAAAGCACCTGGTCTCAGCCAAGAGCAATGGGCG
GCTCACAGTCTTCCCTGATGGCACGCTGGAGGTGCGCTACGCCCAGGTACAGGACAACGGCACGTACCTG
TGCATCGCGGCCAACGCGGGCGGCAACGACTCCATGCCCGCCCACCTGCATGTGCGCAGCTACTCGCCCG
ACTGGCCCCATCAGCCCAACAAGACCTTCGCTTTCATCTCCAACCAGCCGGGCGAGGGAGAGGCCAACAG
CACCCGCGCCACTGTGCCTTTCCCCTTCGACATCAAGACCCTCATCATCGCCACCACCATGGGCTTCATC
TCTTTCCTGGGCGTCGTCCTCTTCTGCCTGGTGCTGCTGTTTCTCTGGAGCCGGGGCAAGGGCAACACAA
AGCACAACATCGAGATCGAGTATGTGCCCCGAAAGTCGGACGCAGGCATCAGCTCCGCCGACGCGCCCCG
CAAGTTCAACATGAAGATGATATGA

Translation (614 aa):
MLAGGVRSMPSPLLACWQPILLLVLGSVLSGSATGCPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLL
DLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLT
KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG
LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL
VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH
SVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRARI
RDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYL
CIAANAGGNDSMPAHLHVRSYSPDWPHQPNKTFAFISNQPGEGEANSTRATVPFPFDIKTLIIATTMGFI
SFLGVVLFCLVLLFLWSRGKGNTKHNIEIEYVPRKSDAGISSADAPRKFNMKMI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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