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Report for CCDS12374.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12374.1 Public Homo sapiens 19 LSM4 24 110 108 CCDS HistoryNCBI Gene:25804Re-query CCDS DB by CCDS ID:12374.1Re-query CCDS DB by GeneID:25804See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12374.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000593829.6 ENSP00000469468.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000593829.6Link to Ensembl Protein Viewer:ENSP00000469468.2Re-query CCDS DB by Nucleotide ID:ENST00000593829Re-query CCDS DB by Protein ID:ENSP00000469468
Original member Current member NCBI NM_012321.5 NP_036453.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012321.5Link to Protein Sequence:NP_036453.1Re-query CCDS DB by Nucleotide ID:NM_012321Re-query CCDS DB by Protein ID:NP_036453Link to BLAST:NP_036453.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036453.1 139 Q9Y4Z0 139 100% 0 0

Chromosomal Locations for CCDS 12374.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 18307464 18307555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18309678 18309861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18312604 18312702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18316024 18316065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18323018 18323020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (420 nt):
ATGCTTCCCTTGTCACTGCTGAAGACGGCTCAGAATCACCCCATGTTGGTGGAGCTGAAAAATGGGGAGA
CGTACAATGGACACCTGGTGAGCTGCGACAACTGGATGAACATTAACCTGCGAGAAGTCATCTGCACGTC
CAGGGACGGGGACAAGTTCTGGCGGATGCCCGAGTGCTACATCCGCGGCAGCACCATCAAGTACCTGCGC
ATCCCCGACGAGATCATCGACATGGTCAAGGAGGAGGTGGTGGCCAAGGGCCGCGGCCGCGGAGGCCTGC
AGCAGCAGAAGCAGCAGAAAGGCCGCGGCATGGGCGGCGCTGGCCGAGGTGTGTTTGGTGGCCGGGGCCG
AGGTGGGATCCCGGGCACAGGCAGAGGCCAGCCAGAGAAGAAGCCTGGCAGACAGGCGGGCAAACAGTGA

Translation (139 aa):
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLR
IPDEIIDMVKEEVVAKGRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGIPGTGRGQPEKKPGRQAGKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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