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Report for CCDS54006.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54006.1 Public Homo sapiens 16 TENT4B 24 110 108 CCDS HistoryNCBI Gene:64282Re-query CCDS DB by CCDS ID:54006.1Re-query CCDS DB by GeneID:64282See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54006.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000436909.8 ENSP00000396995.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000436909.8Link to Ensembl Protein Viewer:ENSP00000396995.3Re-query CCDS DB by Nucleotide ID:ENST00000436909Re-query CCDS DB by Protein ID:ENSP00000396995
Original member Current member NCBI NM_001040284.3 NP_001035374.2 Accepted alive Link to Nucleotide Sequence:NM_001040284.3Link to Protein Sequence:NP_001035374.2Re-query CCDS DB by Nucleotide ID:NM_001040284Re-query CCDS DB by Protein ID:NP_001035374Link to BLAST:NP_001035374.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035374.2 698 Q8NDF8-5 698 100% 0 0

Chromosomal Locations for CCDS 54006.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 50152953 50153032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50153747 50154259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50211323 50211446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50214221 50214267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50216075 50216195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50217556 50217663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50222306 50222434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50223174 50223387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50224657 50224783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50224891 50224994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50225098 50225285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50227839 50228003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50229152 50229328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2097 nt):
ATGCGGCCTCGTCCACGCTCAGCACCGGGGAAGCCGAGGCGGAGAAGCCGCGCGCGCCTCAGAAGCTCCC
GGACGCCCAGCGGCGGCGCGAGCGGCGGCGGCGGCAGCAGCAGCAGCAGCAGCACGGCCACCGGCGGGAG
CGGCAGCAGCACCGGCAGCCCCGGCGGCGCGGCCTCGGCCCCGGCCCCGGCCCCGGCCGGCATGTATCGC
TCCGGGGAGCGCCTGCTGGGCAGCCACGCGCTGCCCGCGGAGCAGCGGGACTTCCTGCCCCTAGAGACGA
CCAACAACAACAACAACCACCACCAGCCCGGGGCCTGGGCCCGCCGGGCGGGCTCCTCGGCGTCCTCGCC
TCCCTCGGCGTCCTCGTCCCCGCACCCTTCGGCCGCCGTCCCCGCCGCCGATCCAGCCGATTCGGCCTCG
GGCAGCAGCAACAAGAGGAAGCGCGACAACAAGGCCAGCACGTATGGACTCAACTACAGCCTGCTGCAGC
CCAGCGGAGGGCGGGCCGCGGGGGGCGGCCGAGCAGACGGCGGCGGGGTCGTGTACAGCGGGACCCCGTG
GAAACGGAGGAACTACAACCAGGGAGTCGTGGGTCTGCATGAAGAAATCAGTGATTTTTATGAATACATG
TCTCCAAGACCTGAGGAGGAGAAGATGCGGATGGAGGTGGTGAACAGGATCGAGAGTGTAATTAAGGAGC
TCTGGCCCAGCGCTGACGTCCAGATATTTGGAAGTTTTAAAACTGGACTTTATTTACCTACTAGTGACAT
CGACCTAGTGGTGTTTGGGAAGTGGGAGAACCTACCCCTCTGGACTCTGGAAGAAGCTCTTCGGAAACAC
AAAGTCGCAGATGAGGATTCGGTGAAAGTTTTAGACAAAGCAACTGTACCTATTATTAAATTAACAGATT
CTTTTACTGAAGTGAAAGTTGATATCAGCTTTAATGTACAGAATGGCGTGAGAGCAGCTGACCTCATCAA
AGATTTTACCAAGAAATATCCTGTATTGCCATACTTGGTTTTAGTATTGAAACAATTCCTATTGCAGAGG
GACCTTAATGAAGTATTTACAGGTGGAATTGGTTCTTATAGTCTCTTTTTAATGGCAGTCAGTTTCCTTC
AGTTACATCCCAGGGAAGATGCTTGCATCCCCAATACAAACTATGGTGTTCTCTTAATAGAATTTTTTGA
ATTATATGGACGACACTTCAATTATTTAAAGACTGGCATCCGGATAAAGGATGGTGGTTCATATGTGGCC
AAAGATGAAGTACAGAAAAATATGCTAGATGGCTACAGGCCATCAATGCTTTATATCGAAGATCCTTTAC
AACCAGGTAACGATGTTGGAAGGAGTTCATATGGGGCCATGCAAGTGAAGCAGGCCTTTGATTATGCCTA
CGTTGTTTTGAGTCATGCTGTATCACCAATAGCAAAGTACTATCCCAACAATGAAACAGAAAGCATACTA
GGTAGAATAATTAGAGTAACAGATGAAGTTGCCACATATAGAGATTGGATATCAAAGCAGTGGGGCTTGA
AGAATAGACCTGAGCCTTCATGCAATGGAAATGGTGTTACCTTGATAGTAGATACTCAGCAGTTAGATAA
ATGTAATAATAATCTATCTGAAGAAAATGAAGCCCTTGGAAAATGTAGAAGTAAAACCTCGGAATCTCTT
AGTAAACACTCTTCAAACTCTTCATCAGGTCCAGTGTCGTCCTCTTCTGCCACACAGTCCAGCTCTAGTG
ATGTAGATTCCGATGCAACACCATGCAAAACCCCGAAACAGCTGCTTTGCCGTCCGTCCACTGGGAACCG
AGTAGGGTCGCAAGATGTATCCTTGGAGTCCTCTCAGGCAGTTGGGAAAATGCAAAGCACCCAAACCACT
AACACATCCAACAGCACCAACAAATCTCAGCATGGATCAGCAAGGCTCTTTCGTTCTTCCAGCAAAGGCT
TCCAAGGTACAACTCAAACAAGCCATGGTTCCTTGATGACAAACAAACAACATCAAGGCAAATCCAATAA
TCAGTATTACCATGGCAAAAAGAGGAAACACAAGAGGGACGCGCCCCTCTCAGACCTCTGTAGATAG

Translation (698 aa):
MRPRPRSAPGKPRRRSRARLRSSRTPSGGASGGGGSSSSSSTATGGSGSSTGSPGGAASAPAPAPAGMYR
SGERLLGSHALPAEQRDFLPLETTNNNNNHHQPGAWARRAGSSASSPPSASSSPHPSAAVPAADPADSAS
GSSNKRKRDNKASTYGLNYSLLQPSGGRAAGGGRADGGGVVYSGTPWKRRNYNQGVVGLHEEISDFYEYM
SPRPEEEKMRMEVVNRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVVFGKWENLPLWTLEEALRKH
KVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDFTKKYPVLPYLVLVLKQFLLQR
DLNEVFTGGIGSYSLFLMAVSFLQLHPREDACIPNTNYGVLLIEFFELYGRHFNYLKTGIRIKDGGSYVA
KDEVQKNMLDGYRPSMLYIEDPLQPGNDVGRSSYGAMQVKQAFDYAYVVLSHAVSPIAKYYPNNETESIL
GRIIRVTDEVATYRDWISKQWGLKNRPEPSCNGNGVTLIVDTQQLDKCNNNLSEENEALGKCRSKTSESL
SKHSSNSSSGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPSTGNRVGSQDVSLESSQAVGKMQSTQTT
NTSNSTNKSQHGSARLFRSSSKGFQGTTQTSHGSLMTNKQHQGKSNNQYYHGKKRKHKRDAPLSDLCR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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